RNA id: TCONS_00006926


Basic Information

Item Value
RNA id TCONS_00006926
length 1352
lncRNA type intronic
GC content 0.42
exon number 1
gene id XLOC_003541
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30298703 ~ 30300054 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAGACAGTATATAGGCACAGAGGTAAAGGTTTACAGTGTCAGGAGAACACTTGATGACTTTAACAATGCACTTAGGAGTGATATTCAGTCTAGTGGTCGGTGTAGTCTGTTCTGCAGCGGTGAATCAGAAACCATCCAGGAACAGCAGCTGGACTGGGAAGCTGTTAGTGGTGCCCATGGATGGAAGTCACTGGACAGGGGTGAAGGCCGTAGCAGAAGAAATGGGACGCAGAGGACACACTGTGATTGTGGTGATTCCAGAGATCAGCATGCGCTTGGGTCCAGGCAAACACTACATCACTAAGAAGTTTCCGGTTAAGTGCAAGCCAGATTTACTCAACCAGATGATAATGAAACACATTAATGAATTGTCAGCTCCAGAGCAATCCCTATTGAAGAGAGTGACTTCAAATATCTACAATTTAGGAAAGATTGTTGACTGTTTCATCTCTACAACTGAGAGTCTGTTCCAGGAGCAGGAGCTTATAGAGTTTCTGAGAGATCAAAACTTTGATGCTGTTTTAACTGATCCTGCAATGCCAATGGGAGCCTTATTGGCATATAACCTGTCCGTACCTGCAGTGTACATGCTAAGAGGATTGATGTGTGAATCTAAAGCTACAGCCTGTCCAGATCCTCCCTCCTACATCCCACGTTTCTTCACACAAAACTCAGACCACATGAATTTTGGTGAGCGTGTAAAACACTTGCAAGTTTGATGGAACCGCTGATGTGTGGATTTATGATTCGTACTTTTGAGGAAGTGACGTCCAAATTTCTGCAGAGAGATGTGAGCATGACTGAGATCCTGAGCACTGGAGCTGTTTGGTTGATGCGTTATGATTTTACCCTGGAGTTCCCCAAACCCCTGATGCCCAACATCATTAACATAGGAGGAATTAACTGTGATGTTAACAACCCACTGATGAAGGTGAGCATCACCATTATATGCGTAATGTATAGTGTGTTGTGGGTAACCAAAATGGCAATTTCAGTGTACTGGACCATTTATATTCTGCTGTACAGTGTGTCTTTTCTAATCTACTTCACCAAGCACTGGCATCGCAtgaataaaacagcattttgttgttatttttgtggATCTCATTTTAAACTCTTAGACCCTTGAAGCTCAACattgtgctttgttttgtttttcaagagAAGGTCACTTACTCCTAGTTTCATTGATCAAGGTTTAAGCCTAGTCCCACAAAATAATTTAAGTCTGAGCTGTTTAAATTGAAAGAAACTTGCACTGACTAATTTTAAATCAATCAGAACTTTTGTTTTGTCTTAAGATCGTCCAGTATTTTTCTTTGGCCATGTTCATTGAACCAGGCCTTAGTG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0048732 gland development biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006919 lncRNA upstream 45146 30252957 ~ 30253557 (+) True XLOC_003537
TCONS_00006918 lncRNA upstream 45148 30252940 ~ 30253555 (+) False XLOC_003537
TCONS_00006917 lncRNA upstream 46767 30250051 ~ 30251936 (+) True XLOC_003536
TCONS_00008633 lncRNA upstream 194866 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006909 lncRNA upstream 219732 30075212 ~ 30078971 (+) True XLOC_003533
TCONS_00006953 lncRNA downstream 747800 31047854 ~ 31055288 (+) True XLOC_003551
TCONS_00008634 lncRNA downstream 904932 31204986 ~ 31212769 (+) True XLOC_003554
TCONS_00008635 lncRNA downstream 905429 31205483 ~ 31209887 (+) True XLOC_003555
TCONS_00006957 lncRNA downstream 936757 31236811 ~ 31240622 (+) True XLOC_003556
TCONS_00006958 lncRNA downstream 984930 31284984 ~ 31320539 (+) True XLOC_003557
TCONS_00006925 mRNA upstream 1329 30296332 ~ 30297374 (+) False XLOC_003540
TCONS_00006923 mRNA upstream 4618 30282141 ~ 30294085 (+) True XLOC_003539
TCONS_00006921 mRNA upstream 17745 30253968 ~ 30280958 (+) False XLOC_003538
TCONS_00006920 mRNA upstream 17846 30253968 ~ 30280857 (+) False XLOC_003538
TCONS_00006922 mRNA upstream 18587 30254556 ~ 30280116 (+) True XLOC_003538
TCONS_00006927 mRNA downstream 3731 30303785 ~ 30304948 (+) False XLOC_003540
TCONS_00006928 mRNA downstream 3731 30303785 ~ 30330015 (+) False XLOC_003540
TCONS_00006929 mRNA downstream 6552 30306606 ~ 30329055 (+) False XLOC_003540
TCONS_00006930 mRNA downstream 6558 30306612 ~ 30307677 (+) False XLOC_003540
TCONS_00006931 mRNA downstream 10116 30310170 ~ 30329055 (+) False XLOC_003540
TCONS_00006893 other upstream 727175 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006890 other upstream 946482 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 2778130 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 3684116 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 4220642 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006949 other downstream 671980 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 674717 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 715465 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 1325117 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 1346890 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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