RNA id: TU247545


Basic Information

Item Value
RNA id TU247545
length 403
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G182759
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6629733 ~ 6630135 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGAATACAGTGCAGTGTCATGTTCTCAAAATTGTGTTATCTATGTTCATATCAATGTGTCCTGACCACCTGGCACTGCTTACTGTGTCATCCGGTCTGTGTatgtcatcatgttttttaactTAATGTTTGTCTGTTAGAGGTCTTGTCTTGAGAGAGGTGAGTGAAGGTGGATCAGGTGGTTTGAGCAAGTTGGAGTATTTTTTCTTATAGGGAGTTTCATAGTGAACAATGCGAATGAAGCTGGTCTGTGTAAAAGTCAGGGTGACAGAAGGTTAAAATTTTGACTTTAGTTGAAACCGTTTACGTTACTTCTTTCAGTAATTTGGTGTAATACTGATGTGGGTGGAGATTTATTCCTATAAGGATAATCCAATTTGGTTTAGATTGCATAgtcacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247525 lncRNA downstream 35908 6578093 ~ 6593825 (-) True G182741
TU247496 lncRNA downstream 221810 6381208 ~ 6407923 (-) True G182714
TU247492 lncRNA downstream 256535 6372487 ~ 6373198 (-) True G182711
TU247491 lncRNA downstream 268254 6359461 ~ 6361479 (-) True G182710
TU247473 lncRNA downstream 344920 6283518 ~ 6284813 (-) True G182694
TU247548 lncRNA upstream 41106 6671241 ~ 6672648 (-) True G182762
TU247555 lncRNA upstream 80459 6710594 ~ 6711141 (-) True G182769
TU247561 lncRNA upstream 86610 6716745 ~ 6717073 (-) True G182775
XR_005636950.1 lncRNA upstream 102022 6732157 ~ 6732712 (-) True LOC120546805
TU247576 lncRNA upstream 126440 6756575 ~ 6756832 (-) True G182789
XM_039781999.1 mRNA downstream 164931 6462940 ~ 6464802 (-) True LOC120546794
XM_039781991.1 mRNA downstream 362260 6232742 ~ 6267473 (-) False cgrrf1
XM_039781984.1 mRNA upstream 132576 6762711 ~ 6800793 (-) True meis2b
XM_039782002.1 mRNA upstream 814726 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 814726 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 814726 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 1419323 8049458 ~ 8126664 (-) False opn5
TU247260 other downstream 717824 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 836795 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1826263 4745773 ~ 4803470 (-) False smim8
TU247550 other upstream 70356 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 397007 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 399839 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 401512 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 403195 7033330 ~ 7033402 (-) True trnak-uuu_21

Expression Profile