RNA id: TU247555


Basic Information

Item Value
RNA id TU247555
length 548
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G182769
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6710594 ~ 6711141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttagattaataatacataacaaagtagagggaggcaggccagccaagccagatccggcagggggagagttctaagcccgaaaaagctacctctccttatgacctgtctctcttagttacctgttatagttacgctgttatagttctagactgccgggggacttccttcctttgacacactgagctgctctctcctctccctttctattactgttactattactattactatttgtgtgcagcccgtcccagaaatgcttgttactaatcctagcttctggggagtttactccccggagtccttatgcttttttcccccagcgtatttccttggagaacgttggcaccaagatcctggttgcagctgtcgccgtggtcctgctgcactccctgctgagctcagcgatgccctgcaatgtcatgctgcgtcctgctgaaccctgcagcttcccgctacatccagtcactgttccattattaatgtgactactatcgccactgttcatcacacccccaaccggctcgtcagacaccgcctaccaagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247548 lncRNA downstream 37946 6671241 ~ 6672648 (-) True G182762
TU247545 lncRNA downstream 80459 6629733 ~ 6630135 (-) True G182759
TU247525 lncRNA downstream 116769 6578093 ~ 6593825 (-) True G182741
TU247496 lncRNA downstream 302671 6381208 ~ 6407923 (-) True G182714
TU247492 lncRNA downstream 337396 6372487 ~ 6373198 (-) True G182711
TU247561 lncRNA upstream 5604 6716745 ~ 6717073 (-) True G182775
XR_005636950.1 lncRNA upstream 21016 6732157 ~ 6732712 (-) True LOC120546805
TU247576 lncRNA upstream 45434 6756575 ~ 6756832 (-) True G182789
XR_005636949.1 lncRNA upstream 157334 6868475 ~ 6871244 (-) True LOC120546804
TU247622 lncRNA upstream 215919 6927060 ~ 6934023 (-) True G182828
XM_039781999.1 mRNA downstream 245792 6462940 ~ 6464802 (-) True LOC120546794
XM_039781991.1 mRNA downstream 443121 6232742 ~ 6267473 (-) False cgrrf1
XM_039781984.1 mRNA upstream 51570 6762711 ~ 6800793 (-) True meis2b
XM_039782002.1 mRNA upstream 733720 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 733720 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 733720 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 1338317 8049458 ~ 8126664 (-) False opn5
TU247550 other downstream 9477 6700491 ~ 6701117 (-) True G182764
TU247260 other downstream 798685 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 917656 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1907124 4745773 ~ 4803470 (-) False smim8
unassigned_transcript_1029 other upstream 316001 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 318833 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 320506 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 322189 7033330 ~ 7033402 (-) True trnak-uuu_21
TU247776 other upstream 1050424 7761565 ~ 7766386 (-) True G182952

Expression Profile