RNA id: TU251494


Basic Information

Item Value
RNA id TU251494
length 2992
lncRNA type sense_over
GC content 0.40
exon number 2
gene id zgc:193593
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19572573 ~ 19620783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTTTATGCAATAAAGCCAAGGCTTTATATACTACCTGTAGGGACCAGTGTCCCTTAAGGGAGATCCTCacagtgcaggtgtgtgtcGGTGCAAGTAAGGGAGTAAGGGAGTGAAGAGTGTGTTTTTGGACGTAGGGAAGAGCCGCTGCCTCAGCCTGGTGGAGAAGACCGAGgccagagagacacagagggcCTCACAGTGATAAAGTTGCCTAGCAAACAGTCCTAAGAGCTGGAAGAGTCTCGTGTGGTCTCATCTGTGAAACATCGGAGAGAACAACAACAATGTTTTTTCGCATCCCTCGACTGACCCCTGGATACATAAGATACCTCCAGACTCAGGCAGCCCAGAATGTGCTGCAGAGCCGGGAAGGCCTTGTGATGCCGCGTATGGCCATCCTGCTGGGTTTCATGGGGATCGGCATGTCCGGCTACAGCTCCCGCCAACTCACACTGAACTGCAAGCCGTCGAGTCACCTCTTTAGATGAAACGGATGAACTACAGGGAGCATACACatccacacatgcacatgcattccccctccacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacatcttttacTTCAAgttaaagtttgacattttggaaaatatgccTATTCGGACTGCTTGTCGAGCAGAGGATACTTGGGAGACCACTCTGTGGTTAATAAATGATATAACTCCctataaaacagaaaattgtttttttttttgtacagaataaacaaaaaagacaTATCATTGTCTGGTAGATTGATTTGTATTACTTGATCGAGAAGGGCTAGCCGTCTCCCTGTGTttcaagtctttatgctaagctaagctgatCGGCTGCTGGCTGgcagcaaataagcatatttcttAAAATGTCTATTCATTTAACAGCAACATGCCACCAGGTTCTACTAGGtttctgttttttgtattttttctgtGCATCATTACTAACAATCCCCTCTTTGTGGTTCAAGTTCAGTGTCGTCCGTGTTCTGGATTTCGTCATGATTTTATTGTGTTTGAGATTTTAAGATTGTTGCCTTGAGGCTCCTTTgtgcagtaaaaagtaaaaacattatTTCTTGTGACTAATATGCAGTGGAACAGAAAGGCAGCTTTTGATGTTTCTGATGACCTTGGCTGATGTCATACGTGAACCACAATCCCTCCCCATCTCTTCCTTATCATGGGAGTGTTCATTTAGAATTTgacttttaaattattttttcaaacattAATGGTCTTTAAAGCACTGAGCCCCAAGAAATCTCTTCCAAAATCTTCACTCTTTTAATCACCATTACTTTTTCCTCTGCCATTTTGGCAATTTCTATGATGTAACTCCCAGGTACCCCCTCTTTCAAAAGGACAGCCAGTATTGTGAAGTCTTGACATGTTTGCTCTTTTTGGATTTCTTGGGAGACATCACATCACAAGCAGCTTCAACTCAGAGAATCAAAAGTTATATTTCACTCTTGATTCTGGATTTGACAGTATgagttttagtttttctgaTATCTCTCTCCTTTGTGTTAGCATGACTAAACACCAGAGGAGTAAGTACAGAATTGCTCCCAATCTGTTTGGCTGCGCTCAACGCCTGTAAATGCACAGAGAAAATACTCTACAAGCAGAAACATAAGAACTGTGTTTAATTTTTTGATGTGTGAACAATGCTACTTTGCACTTTTTTGTGTACATCTTGTACATAACCATGTACACATCACTTTGATGCTGAACGAGATTCGTAGAACATGACATTGGGTGCTACACCAGCCTGTGTTGTGAGCTGGACTGGGTGACATCTAGCTGGATTGACACACTGCTGTGTTATTGTCAGGCAGAGGAACCAGGACAGCCACCCTGGATCCCACCTGAACTAACATGTGAATCCATCCGGATCTCTCCCAGTTGCATACCACCGTCAGACAATGTAGATGAATGACCACTACGGTCTCTTAACATAGcaagacttttttattttggctgTATATCTTTTCTGCACAATGCTTTGTAATGGAAATAATGACTTTGACAGTATATGAATGTATCACCGACGTTATAATGTGATTGTAAAGATGATTGTCTTCCCTGCTCTGGTTTCACAAAAGACAGGTTACGGTAtgactttattttaaatgtataagAAAAGATTAGCATGTCACAAGGTGTGTGCAGTGATACATGATCCCTCGCAGATCCTCTTAAGATACTTTGGTCTTTTTAAGACCAACTTTCTGTATACTTATATATGAAAGAGGTCACTAACCCTGAAATGGAGACACGTAAGAGTGTGACAGAGCAACAAGTTTGTGTTATGTAAGTAATTTAAGCTCGTAATTCTAATTGAACACGGTATTTAAATGTATGATATTGTTGCTGCAATGTTGTTTAGGATTCATTGTTGCTGCATAGCAAGTTTTGCTTGTTTGTtaggttttttgttgttgttgttgttgttgttgttgttgacagtTAGTCCTCATCATTGTACAAATGCATAAGGTGTCTCAAATACCTCCTTGTAATGAAATCTACCTTAAAATTGTGTATATTAACCCTAATTAATCAATATGTAAATGAATACAGTTCAGGAGTGTGTGGTGTGAATTAATTACAGGTAGTAAATCTGAATCACAAAAGACATAGTTGTGCATTCACATTATTCATCATACAAATGACTTGCATATGTGTGTATAGAAACAGAATTGTATAGTTTGCAGTTGTGGATTTAATGTTGGTTGTGTAGTGAGTTGAACTCAGTTGTGGCGGCATTAGGACTTGAGCCAATTAATGATGCATTTTATTTGTTACTGACTTTGTCATAACACAGATACAGCAAAACTAGGTCATCCTGTTTTTTCTTTAGATTTGCCTTAGTGATGTGAAGCATTACAAATGCACAACAAAGCACCTTTAAACTtgcattcttttttattatttaatcacTCTGTATGCAAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251505 lncRNA upstream 18365 19553274 ~ 19554235 (+) True G185696
TU251470 lncRNA upstream 145137 19354616 ~ 19427463 (+) False acbd3
TU251479 lncRNA upstream 198667 19368053 ~ 19373933 (+) False si:dkey-206f10.1
TU251440 lncRNA upstream 293243 19278107 ~ 19279357 (+) True G185656
TU251378 lncRNA upstream 488816 19082696 ~ 19083784 (+) True G185599
TU251523 lncRNA downstream 75338 19652237 ~ 19652575 (+) True G185711
TU251528 lncRNA downstream 115237 19692136 ~ 19693056 (+) True G185716
TU251630 lncRNA downstream 131432 19708331 ~ 19708930 (+) True G185793
TU251631 lncRNA downstream 132315 19709214 ~ 19709512 (+) True G185794
TU251632 lncRNA downstream 134628 19711527 ~ 19711832 (+) True G185795
XM_039781570.1 mRNA upstream 30768 19494598 ~ 19541832 (+) False nhsl1b
XM_039781955.1 mRNA downstream 7803 19584702 ~ 19598107 (+) False si:ch211-225h24.2
XM_039781954.1 mRNA downstream 7805 19584704 ~ 19598107 (+) True si:ch211-225h24.2
XM_039782308.1 mRNA downstream 56601 19633500 ~ 19648130 (+) False acp1
XM_039782313.1 mRNA downstream 56601 19633500 ~ 19648130 (+) False acp1
XM_039782314.1 mRNA downstream 57345 19634244 ~ 19648130 (+) False acp1
XR_005636888.1 other upstream 33292 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 33392 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 33392 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 364504 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 640213 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251521 other downstream 57384 19634283 ~ 19648156 (+) False acp1
TU251678 other downstream 279836 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2367844 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2408880 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 4001479 23578378 ~ 23589689 (+) True nfkbie

Expression Profile