RNA id: TU252261


Basic Information

Item Value
RNA id TU252261
length 385
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id G186297
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21540588 ~ 21542781 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAAACTCACTATCCAGCTCCTTGTCGTACACCATCAGCTCGTCCACTCTTGCTTTAACCGTTCGTTTCTCAGAGCCGTCTGCAGCGTGACCCTTCTTCTTGTCCTTGGAGCTCTTCTTCTCTTTGCTCTTTTCCTTTGTCTTGGAGCCTGCTGCCTCTGCAGCTATCTCCAggtcctctctctcctctgcctctgCCTGAGCCACGTCCTGGGCTCTGAGCGTCTCCTTCAATGTCTCTATTGAAGCAAAATATTTGGACCACCAGTCCAGCACTCTCTCATTGGTCTCGTCCTCTTCCTCCACTCctcccttctttttcttcttcttcttctttttctctttgtcactctcctcctcagtCATGTCAACTTTTACAACAGCG

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252179 lncRNA upstream 65284 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 192007 21347944 ~ 21348581 (+) True G186210
TU252054 lncRNA upstream 367949 21170982 ~ 21172639 (+) False gtf2h5
XR_005636932.1 lncRNA downstream 202800 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 290167 21832948 ~ 21833782 (+) True LOC120547080
TU252574 lncRNA downstream 751661 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 758003 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 992878 22535659 ~ 22537716 (+) True G186506
XM_039782268.1 mRNA upstream 15286 21512574 ~ 21525302 (+) True drc1
XM_039782681.1 mRNA upstream 33764 21501751 ~ 21506824 (+) False ostm1
XM_039782680.1 mRNA upstream 33764 21501752 ~ 21506824 (+) True ostm1
XM_039782671.1 mRNA upstream 66566 21457561 ~ 21474022 (+) True snx3
XM_039782901.1 mRNA upstream 217502 21274857 ~ 21323086 (+) True sesn1
XM_039782410.1 mRNA downstream 74558 21617339 ~ 21653568 (+) True fndc1
XM_039782414.1 mRNA downstream 74558 21617339 ~ 21653568 (+) False fndc1
XM_039782412.1 mRNA downstream 74558 21617339 ~ 21653568 (+) False fndc1
XM_039782411.1 mRNA downstream 74558 21617339 ~ 21653568 (+) False fndc1
XM_039782415.1 mRNA downstream 74559 21617340 ~ 21653568 (+) False fndc1
TU251678 other upstream 1680383 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1892432 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 2001280 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 401962 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 442998 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2035597 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2035597 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2536822 24079603 ~ 24083104 (+) True G186975

Expression Profile