RNA id: XM_039782901.1


Basic Information

Item Value
RNA id XM_039782901.1
length 2026
RNA type mRNA
GC content 0.52
exon number 10
gene id sesn1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21274857 ~ 21323086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCCTATCTTTTCTACTCTGGGACTGACGTTACTGGTCAGTGCTGTGGTAAGGCTTTCCGTGGCAGAATACCTGCACCAAAGAATGTGGATAAACCTGTTGTAAGACAGCACAAACGTTAGTCCTACATCAAAAGATGGAAGTGCAGGACCAGGAGTCTCTGGGAAGATGGGACCGGCTGGGCAGCCGGGATGCTATCTCCAGAGCTAAAGCCATGGAGAACATCTGCCAGGACGTCATGAGGCAAGTGGAGGCCATCAGGCCCATACCATCATTGGCCCTGTCACCCCCAGCCTCAGGAAGCCCTCCCAAGAGTGACCTAAATGACATCCTGGCTCACCTCCTCATGCTGTCCAAACGGTGTCCCTATGACGACGTGAAGGAGCGATGTGTTCGGCTTTTACAGGGAGTCCAGGACTTGGGAGTAAGGATCCCAAGACCCTTAGGAAACGGACCAAGCAGATTTATCCCTGAAAAAGAGATTCTTCAAATCAGTAAAGTGGACGCCAGGACACAGTCGATATTTGAGGATGCGTTTGCAGCCCTCGGTCGCCTTGACAACATTTCTCTGGTGATGGGCTTCCACCCGCAGTACCTGGGGAGTTTTCTCCGGACGCAGCACTACCTGCTGCAGATGGATGGACCTCTGTCTTTGCACTACCGACACTACATCGGCATCATGGCAGCAGCTAGACACCAGTGTTCCTACTTGGTCAACCTCCACGTGAACGACTTCCTCCAGGTCGGGGGTGATCCCAAGTGGCTGAACGGCCTGGATGAAGCGCCGCAGAAGTTGCAGCAGCTCGGGGAGCTCAACAAAATCCTGGCCCACCGACCTTGGCTTCTCACCAAGGAACACATCGAGtgcCTTCTGAAGGCAGAGGAGCACAGCTGGTCCCTCGCAGAGCTGATCCACGCCGTGGTCCTCCTCACACACTACCACTCCCTCGCCTCGTTCACCTTCGGCTGCGGCATCACGCCCGAGATCCACTGCGACGGCGGACACACTTTCAGACCCCCCTCCCTCAGCCAGTACTGCGTCTGTGACATTGCCAATGGCAACGGACATGCTAATCACCACGACGATCCGCTTGGCAACCAGGAGATGTGTGGTGAGGTGGAGGTGCTGATGGAGCGCATGAAGCAGCTGCAGGAGTGCCGCGACGACGAGGAGGCCAGCCAGGAGGAGATGGCAACTCGCTTTGAGAGGGAGAAGACGGAGAGCATGCTGGTGGCCACAGCGGAGGACGAGGAGTGTGTCCCCTCCAGAGACATCTCCCGACACTTTGAGGACCCCAGCTATGGCTACAAGGACTTTTCCAGAAGGGGGGAGCATGTGCCCACATTCAGAGTGCAGGACTACAGCTGGGAGGACCACGGTTTCTCCCTGGTCAACAGACTGTACCCTGATGTTGGTCAGATGCTGGACGAGAAGTTCCAGATGGCCTACAATCTGACCTACAACACCATGGCAACACACAAGGATGTTGACACCAGTATGCTGCGCAGGGCCATCTGGAACTACATCCACTGCATGTTCGGCATCAGGTATGACGACTATGATTATGGCGAGATAAACCAGCTTCTGGACCGTAGCTTTAAGATCTATATTAAGACTATGGTGTGTAGTCCTGAGAAGACCACCAAACGAATGTATGAGAGCTTCTGGAGGCAGTTTCAGCACTCCGAGAAGGTCCACGTTAATCTGCTTCTTATGGAAGCGCGAATGCAGGCGGAACTGTTATACGCTCTGAGAGCGATTACCCGCTATATGACATGAAGTGCTTTTGGCGTTTTTATCGTTGTCTTTTTACTGTCTGTCATTGCTCATTATGGGacactttaagaaaaaaaaaaaaagaaaatcaaaggggggggggtgaattcaacaaaaatgtggAAGCGAAGTGAGAAGCCCTGGGTTGTGACAGTGCTTATTGGATGGATTTTGAGAAGAGGAACAGAACAAATGAAagcaaggaagaaaaaaaaaaaaaggaactgtTGAAGTCATCTCAAGCTACAA

Function

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10141 SESN1_3; sestrin 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252054 lncRNA upstream 102218 21170982 ~ 21172639 (+) False gtf2h5
TU252055 lncRNA upstream 102218 21170982 ~ 21172639 (+) False gtf2h5
TU252056 lncRNA upstream 102218 21170982 ~ 21172639 (+) False gtf2h5
TU252057 lncRNA upstream 102218 21170982 ~ 21172639 (+) True gtf2h5
TU252044 lncRNA upstream 121682 21151461 ~ 21153175 (+) False LOC120546175
TU252169 lncRNA downstream 24858 21347944 ~ 21348581 (+) True G186210
TU252179 lncRNA downstream 151466 21474552 ~ 21475304 (+) True G186220
TU252261 lncRNA downstream 217502 21540588 ~ 21542781 (+) True G186297
XR_005636932.1 lncRNA downstream 422495 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 509862 21832948 ~ 21833782 (+) True LOC120547080
XM_039781537.1 mRNA upstream 8284 21251980 ~ 21266573 (+) False cd164
XM_039781536.1 mRNA upstream 8284 21251982 ~ 21266573 (+) True cd164
XM_039781535.1 mRNA upstream 23668 21247663 ~ 21251189 (+) False ppil6
XM_039781534.1 mRNA upstream 23668 21247914 ~ 21251189 (+) True ppil6
XM_039780900.1 mRNA upstream 48052 21224551 ~ 21226805 (+) True mrps10
XM_039782671.1 mRNA downstream 134475 21457561 ~ 21474022 (+) True snx3
XM_039782681.1 mRNA downstream 178665 21501751 ~ 21506824 (+) False ostm1
XM_039782680.1 mRNA downstream 178666 21501752 ~ 21506824 (+) True ostm1
XM_039782268.1 mRNA downstream 189488 21512574 ~ 21525302 (+) True drc1
XM_039782410.1 mRNA downstream 294253 21617339 ~ 21653568 (+) True fndc1
TU251678 other upstream 1414652 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1626701 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1735549 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 621657 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 662693 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2255292 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2255292 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2756517 24079603 ~ 24083104 (+) True G186975

Expression Profile