RNA id: TU254910


Basic Information

Item Value
RNA id TU254910
length 1352
RNA type TUCP
GC content 0.55
exon number 1
gene id G188207
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29419376 ~ 29420727 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCTGGTCCCAGTTGGCTGCGAACAGGACCAGTATTTTCCTGCCGTATCTGTCCAGATTGGAGAGCACGCCGGGGAAACCGTCCTTCAGGGCCTGCTTGATCCCCGGGTCCGTGGCTTTCAGGTTCTTGAACATGTCCAGGTTCTGCTGTCGGTACTCAAAATACTGTGCCAGCAGCCGAAACGCCTCGAAGTGGTTGAACTTCCTCGCCCGGAGGAATCGGATGATAAACGCGTCGTCCGTCCGGAGGAAACCGATGTCCGGCCGGGTGATGATCATGTCCCGGACTTCCTGGATGTCCTGGTGTAAAGTCTCGGGGTTTTCTTTCAGCTCCACCTTGGCCTTCTCCAGGGTCTCTGGAGAGAGGCCAGTCTGTAAGTGAGTCATCTCTGGCAACAGCTGTCCCTCCACAACCAGCTTCCAGTCAAACAACACAATCAATTGTTCCCCCAACAGCAACAGGGTGAAGtgtatgaaatgtttttttttcctgtatgaTTTCACTGATCACAAGCTGACTCCAGATGGAGGCCTGCTGCTCTGTACACGTAATCCACCCCGAACTGGCACAGACGCTGCTGCTGTGATGCTCCTATGATGCATCCTCAACACACATATGGGCCGTTCACTTTTACGCACAGAAACATTGCAATTCCACAGTCCAGAATTCAACttttattgtaattattttttcttcttctccccaCCACGTATAGCCTATGTCATGACTCAGGTGCTTCTCTCTAGGCTTCGGGCGGTACATCCAACCTGCTGATCCGGGCGGCCTGAgctcacagacacagacgcgCGGCCGCTTCCCTCCATGTCAAagcctctcctctctgtctgtgacagaatgacgacgacgacgacgacgacagCATCACCGTCTCCCCGGCGTCGCTCGCGGCGGCCAGGCAATGCGGCACAACCCTGCAGCACCTGCTATATCACTATCATCATCCCTCCGCCTTGACAACGCATCTCCATCCGCCGACCgactgatgctgctgctgccgccgctggtggtggtgctgctgctggtggtgccGCCGCTCCGTCACCGTCAATCGACGCAGATTTGGTCCGCTTGTTTCCGCGTCTatacccccccccaccccgccTTTCATTCACCACTGCTTCTCATCAGCACCATCCACGATTTGGGTGTGAATTTAGATCTTAAATCGTGTTTCACAAAGAGCACAAAAAAGGGGAGAGTATCCAGTCCAGCAGCACAGGTGTCCTGCGAGGTTTTGCCACCAGTTTCTAGAAAGGGGTGGGGTGGACTAGAGAGGGTGGTGGTGGGAGGGGctgggaggtgggggggggattACCTcctcttgctgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254909 lncRNA upstream 34934 29384210 ~ 29384442 (+) True G188206
TU254861 lncRNA upstream 257483 29157305 ~ 29161893 (+) True G188172
TU254857 lncRNA upstream 275829 29138073 ~ 29143547 (+) False G188168
TU254855 lncRNA upstream 278754 29138073 ~ 29140622 (+) False G188168
TU254856 lncRNA upstream 278754 29138073 ~ 29140622 (+) True G188168
TU254911 lncRNA downstream 6698 29427425 ~ 29428647 (+) True G188208
TU254866 lncRNA downstream 22620 29443347 ~ 29447023 (+) True G188177
TU254998 lncRNA downstream 117448 29538175 ~ 29538452 (+) True G188281
TU255005 lncRNA downstream 155497 29576224 ~ 29578102 (+) True G188288
TU255008 lncRNA downstream 158908 29579635 ~ 29605099 (+) True G188290
XM_039781412.1 mRNA upstream 48226 29315759 ~ 29371150 (+) True LOC120546480
XM_039782701.1 mRNA upstream 114436 29292705 ~ 29304940 (+) True si:ch211-245h14.1
XM_039782699.1 mRNA upstream 114436 29292705 ~ 29304940 (+) False si:ch211-245h14.1
XM_039782702.1 mRNA upstream 114436 29292705 ~ 29304940 (+) False si:ch211-245h14.1
XM_039782700.1 mRNA upstream 114436 29292749 ~ 29304940 (+) False si:ch211-245h14.1
XM_039782099.1 mRNA downstream 440647 29861374 ~ 29875824 (+) True LOC120546866
XM_039782100.1 mRNA downstream 456194 29876921 ~ 29882724 (+) True LOC120546867
XM_039782112.1 mRNA downstream 474698 29895425 ~ 29943833 (+) False LOC120546870
XM_039782109.1 mRNA downstream 474698 29895425 ~ 29906694 (+) False LOC120546870
XM_039782111.1 mRNA downstream 474698 29895425 ~ 29906694 (+) False LOC120546870
TU254892 other upstream 107012 29292741 ~ 29312364 (+) False si:ch211-245h14.1
TU254896 other upstream 107012 29292741 ~ 29312364 (+) False si:ch211-245h14.1
TU254854 other upstream 282459 29134171 ~ 29136917 (+) True G188167
TU254737 other upstream 528012 28886490 ~ 28891364 (+) True G188063
unassigned_transcript_1089 other upstream 766692 28652602 ~ 28652684 (+) True trnal-cag_2
TU254981 other downstream 41122 29461849 ~ 29463874 (+) True G188268
TU255018 other downstream 224527 29645254 ~ 29645823 (+) True G188296
unassigned_transcript_1091 other downstream 952939 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 1203753 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 1373492 30794219 ~ 30812143 (+) False LOC120546905

Expression Profile