RNA id: XM_039782100.1


Basic Information

Item Value
RNA id XM_039782100.1
length 3465
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120546867
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29876921 ~ 29882724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGATAACGCAGCGCTACTTCTGCTTTAACAACACGCTCACTAGGACCGACGCCATCTCGGAATAAGGGACGTCTATAGGGTGTTTTTGGAAGCAGAAAATATTCAAATACCACAAGTTGACTTTCAGAAATTTCTGGGGAAATATAACGTTTTATTCGTTTAGTAATTCTTTCTGCGTCTGCGGATAAGAAAGTGTATCAGCCGCCCTCGAAGAAGtagcttaacgttagctaactgttAGCTTGTGACGTAGTTAGCTAAACTAGCTAACTTAACCGCGGAGGAATTTCACAGCCTGTTTATGTTTTCGCCAGTTCGAAAAAATGTTGGACGGATCCCCGACTCACGGTGATGAAACGAACATCGGTAACGTCGAAAACAACAACCCGATATCGTTGATAAGCAGCGATGGGGTGAACAAGACGAGACAGGCGCTGCTGAAGAAAGGGAGGAAGCTGCGGTCGACGGCGCCACTGCATCACCAGAAACCTCCGAGAAACATCCCCAACATCCGTCTGTccgaccacaacaacaacaacactttaTCTGCTAACAAACCAGCAGCTCAGCCCGGTACCGAGCTGCCTCTCGGTACACAGGCCGTGCTGACCCTCCATCATCTCAACCAGGGACCCAGGACAGAGCTGCTGAAATCCAAAGGCGGCAGGTCGGAGCAAGGAGCCGCACAGCCCGGTGGCCAACCCGGCCGCAACCAGCCCCGACAGGACCGAATCGCCCAGAACATGATCACGCGGAGCCACAAGCCCAAGCAGGGCCAAACCCCCGCAGCCTCCCGCTCCGCTAAGAGGAAAGAGACGGGCAGCCCGAACAAGCCCCACCCTCGCCACCAGCCTCCGCCCCGAGAGCACAACCAACCCCTCCGCGCCTTCGACGCTGCGCCGGTCGCGAACACGCCGCCTGCCGAAGCCGCGCCCGAATACCTCAAAGACGGCGAGAAGGTCTACGCCGGGGCCAAGTTCAGCGAGCCGCCGTCGCCGAGCGTCTTGCCCAAACCGCCCAGCCACTGGGTCGGAGAAAACGAGCCTCAGCCGAGCGACCGGAGCCGAGAGCAAATGACTGTTCATCTCAAGTCGCTGCTGAAGGTTCAGGAGAAGTCATGACCACGTCTGCTGTCGCATCCACGCTTGAATGCCAACAATTGGAAAACAGGCATTCATGTAAAAAATGTAGTTTGGCCTTTTAAACACACTGAAATACAATCTAGGGAGTTTTTTTATTAACTGTAGTACAATTTCTCATGATTCAACATGCTGCCTGCATTTGTAAACATTTTGACGCCGCGTTGTTGCTGGACATCTgactaaacaaatattttctgCCGGCATGTCGGCAGAGTAAAAGagaaaatgtttgtgattggaTTTGTGTACTAGGAAGTCGTCTCCAGCAGCAACGCGATCAGCGCCTAATGGTTACATAGTGCAAAGTGATTTTTTTACGCTATTGAAAAGGCagttttgtgttgattttttttccaagagCTAGTGCAAATGTACATAATATAttgtaaacatacatgtgtgtatatttctCCTTGTTATTTTTAACTGAGATTCTAGTTTTGTTACTGAggtttttccaaaaaaaacaaaacaaaaaaaaacaagaaaaaagaaagaggaaaaatatCCCCTGCAAACTGAGGCGCTTTGTTACAGCTTCTTCAGCGTGAGGCTCAGTGGAAGCACGAAAAGACTTTTCTATCTGATTTGCACTGAAAATCAGGGGGAAGGGCAGGGAACCTTTCGATTTTTATCCAAACGCTTGACCAGCCACTTTGATGACTTCATCAGCCTTCGTCGAGCACAGGAGAGCACTTCCGGGTTCCCGGCTGGCGGGGCGCCTTTTCAAAATGGCTCAGCCAGCGGACAAATCACAAAGTCCGAATTTACCATCCGGTCGCTGAAGTTCTTTCCCTTCCCCCGAACACGGGTCCAGCCTGGTGGAAAGCCACGGGTGGAATCAGGGACCGTGAGGCCGCCGAAGCCTCGCTCACAAACTGAAGAGAAATGTGAAAAGTCTCACGACCAGCTGCTGCACAAAAAAGCCAGTATCCAGCATCAAGACCATGTGctgctgcttcttttttttatctttattgcaCTGACTCCAAGTCAGTCACATTAAGCTGTCTACATTTGAAATATCTTTTTCTCGTCTGTCCACACAGCCGGTGTATTTCACACCCCCAAAACAGATTTTTCATTCAGATTTCATGTTGTGCGTGTACGGGTGAAACTGAACTTGACATACATTACATTAGCCTGGCCCGGTCGTGGCTGAGGATTGTGAGGCATTAAGAAAGACAATCTTCTGTCCCCTCCAGCTTTCTCTGTGATCATAATGGTCAATACTGGCGATCGCCAACACCGCTTTTTGACAGAAGATGTCACGATTAGAAGTAGTCGATTGCCTCAAAAGCTACCTGCAGCTCTTTTGATAATCTATTAAATGTTTGCGTCATTGCctaagcaaaaaaaagaagaaaaaaaagccaagCATTTGCTGGTTCCAAcgtctaaaatgtgaggattttctaTTTTATGTCATCTAAGTATGTTTGGATTTTGGACTACTTTGTGGCATTTTAGGCAATAATAATGAGAAACTATGGGCTAATCGACAatgaaatgaatcattagttGTACCGTTGGACATAATCATAAAATAATGACATGCAGTGAACATGTAGCATTTATTATATACTAGTTATACCATTATCTGGCAGTAAAAACAGGTAAACGCAAGTGAGGACAACTAAATGGTGACTTTGGCTGTTTTCAAACGGCCATATAGGTGATCACGGAGAGCAGGAGGGGACAGAAAACAGGTTTAAAAGATGTTAATGTTTGTCCCGCTCTCTACCAGATGGTAGAGGTACGAGAAGAAGCTGTTTTTGTGTTATTCAGGTGTTTCAGGATGGACGGCACGCAAACAAGCGCTCATGTGGACGCACATAAAACTGCCTTTTTAAAGATTGTATGGCTTCATGTGGATGTAGTTTCTGTATGTTAGACTGTATGTTGTGTCTTTTAAAGGGGACTCGGTTCCACACACTTcgttttcatttctttaaggTAATTTAACGCACGTCAATGTTTACCGAGAGTGCGGGACGTGTTCCGTTTTGGCACAGATGATCTTGTGATTGTGTACGACGtgttcttttgtttcttctgGATGGTTTCCAGGGATGCAGGCAGCTGCTGGATCTTGTTTTCTTGACCTCTGTGACGTCACGCGAGTGGGAAATTGTATTACTGTATCAAAAACTGCCCATTTTTATGACAGTGTTTTAAAAAGATGATTTCATTCCAGTTATGAGAACATGCTAAACGAGGCACCTCCATGCCACAATTtggatggggaaaaaaagtttattttatgAAGTCTTTCATATCTAaattaaaaattattaaaatattggTTACCCCTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636968.1 lncRNA upstream 83242 29787961 ~ 29793679 (+) True LOC120546865
XR_005636962.1 lncRNA upstream 216186 29659256 ~ 29660735 (+) True LOC120546861
TU255008 lncRNA upstream 271822 29579635 ~ 29605099 (+) True G188290
TU255005 lncRNA upstream 298819 29576224 ~ 29578102 (+) True G188288
TU254998 lncRNA upstream 338469 29538175 ~ 29538452 (+) True G188281
XR_005636969.1 lncRNA downstream 4140 29886864 ~ 29888884 (+) True LOC120546868
TU255051 lncRNA downstream 46118 29928842 ~ 29985502 (+) True G188321
TU255055 lncRNA downstream 49826 29932550 ~ 29932860 (+) True G188323
XR_005636975.1 lncRNA downstream 51870 29934594 ~ 29935486 (+) True LOC120546875
TU255056 lncRNA downstream 57482 29940206 ~ 30032961 (+) False LOC120546873
XM_039782099.1 mRNA upstream 1097 29861374 ~ 29875824 (+) True LOC120546866
XM_039781412.1 mRNA upstream 505771 29315759 ~ 29371150 (+) True LOC120546480
XM_039782701.1 mRNA upstream 571981 29292705 ~ 29304940 (+) True si:ch211-245h14.1
XM_039782112.1 mRNA downstream 12701 29895425 ~ 29943833 (+) False LOC120546870
XM_039782109.1 mRNA downstream 12701 29895425 ~ 29906694 (+) False LOC120546870
XM_039782111.1 mRNA downstream 12701 29895425 ~ 29906694 (+) False LOC120546870
XM_039782113.1 mRNA downstream 12701 29895425 ~ 29904533 (+) False LOC120546870
XM_039782110.1 mRNA downstream 14736 29897460 ~ 29906694 (+) True LOC120546870
TU255018 other upstream 231098 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 413047 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 456194 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 564557 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 490942 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 741756 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 911495 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 971251 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1615231 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile