RNA id: XR_005636969.1


Basic Information

Item Value
RNA id XR_005636969.1
length 713
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC120546868
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29886864 ~ 29888884 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACAGTGATACGGTGACGTTAAACTGCTCTGTGTCGACATATGATGGATGTACTCACACAGTGAAGTGGCTGtatgagggtaaaaaaaacTGAGTTTTGAGGGTCCAGATGACAGAGGCGTGACAACATCGCAGTCTGGCTGCTCGGCCACTGTCTCCTTTCCGACTTCTCATTTCCTGCAGGTTTCTAAGACGTATGAGTTGCTCAAGTGTAAAGTGACAGATGGTTACGTGCCCACCATAAAAGTGTTCCCCTTCAGTCCTCCTCAGTCCTCAGCTGGTACCGGTTGGTCTGCTCTGAACTACATCATGTTGGCTCTGCATGTGGCTGAAGTCCTCCTAATGGCTGGGATTACTGTTCTCCTCCTCAGAGCTCGAGtttctaaaaagAAATAATGGATGCTGGATCAGGGAGGTTGGGAGTTAAAAAGCTGGACAGCCCTGGGGACAAAGGCTTCCCTTCTCTGCACCTGATTAACACAAAGTGTCAGCCCGGAGCTGAACTGTGGTTTATTTTCCAGGGAACCGTAGAGCACCTGATGACAACACTGTGCATGGTGATGGAGATGAACATGGCGGCACTGTGAACTTTGAAAACGTTGGAGAGCCTTCTGTTTCTGTCAGACTCCCCTAGAGCTGGgcattatatcgatatcgtgatatgagactatagatatcgtcttagattttggatatcgtaaaatCGTAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636968.1 lncRNA upstream 93185 29787961 ~ 29793679 (+) True LOC120546865
XR_005636962.1 lncRNA upstream 226129 29659256 ~ 29660735 (+) True LOC120546861
TU255008 lncRNA upstream 281765 29579635 ~ 29605099 (+) True G188290
TU255005 lncRNA upstream 308762 29576224 ~ 29578102 (+) True G188288
TU254998 lncRNA upstream 348412 29538175 ~ 29538452 (+) True G188281
TU255051 lncRNA downstream 39958 29928842 ~ 29985502 (+) True G188321
TU255055 lncRNA downstream 43666 29932550 ~ 29932860 (+) True G188323
XR_005636975.1 lncRNA downstream 45710 29934594 ~ 29935486 (+) True LOC120546875
TU255056 lncRNA downstream 51322 29940206 ~ 30032961 (+) False LOC120546873
XR_005636974.1 lncRNA downstream 78086 29966970 ~ 29979067 (+) True LOC120546874
XM_039782100.1 mRNA upstream 4140 29876921 ~ 29882724 (+) True LOC120546867
XM_039782099.1 mRNA upstream 11040 29861374 ~ 29875824 (+) True LOC120546866
XM_039781412.1 mRNA upstream 515714 29315759 ~ 29371150 (+) True LOC120546480
XM_039782701.1 mRNA upstream 581924 29292705 ~ 29304940 (+) True si:ch211-245h14.1
XM_039782112.1 mRNA downstream 6541 29895425 ~ 29943833 (+) False LOC120546870
XM_039782109.1 mRNA downstream 6541 29895425 ~ 29906694 (+) False LOC120546870
XM_039782111.1 mRNA downstream 6541 29895425 ~ 29906694 (+) False LOC120546870
XM_039782113.1 mRNA downstream 6541 29895425 ~ 29904533 (+) False LOC120546870
XM_039782110.1 mRNA downstream 8576 29897460 ~ 29906694 (+) True LOC120546870
TU255018 other upstream 241041 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 422990 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 466137 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 574500 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 484782 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 735596 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 905335 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 965091 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1609071 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile