RNA id: XM_039782110.1


Basic Information

Item Value
RNA id XM_039782110.1
length 2160
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120546870
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29895425 ~ 29943833 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACGGACATCAAGAGTGAAATCCTGCTGGGCGAGGAGTTTGACTCTTCagctgtgtgttcatgtgtgaaagatgtcagtttcaCAAATGCACCCTGGGACAGGACACAGTGTGAACACCGGATTCAATATGAGATTAATACAGTTTGTTTGTTGCAGCGTTAGATTGGATCAATGAACACAGAAACATTTAACTATGAGaaaactacatttaaaaaatgaaaaagtgaaaattGTAAAAACCTTTTTGGCTGTTTGGTGTCTATAAGGAATTCAAACAGCCTACAACTAACCCTAAAAGTCATAAGGAAGTGACATCCTAATTACAGGAAGTAGGTGCAGCATCTCTCGACTAAAGCACTATTTTAGAAACCGTTCTGAGCatcagaacgagagagagagaagaagcagagacacagagaagcaCGATGGAAGAGTTCAAATGgatcaaaatgtctttatttctgaTACCGCTGCTTCACTTTACAGCAGCAGCTGGAAACCATTTCCTCTCCTTCACTGTCAGAGCTGGAGATGATGTCACTTTGCCTTGTGAATATGTGATAGACGGTCAGAGAACGTGTAACAGTACTACCTGGCTCTTCAGTCGTTCAGGAAACACAGTGACGCTGTTTGAACTCGGGCAGATTAAAGAAGAAGCCAGAGTTAAATCAGACAGACTGAGTCTTAGAGAGAACTGTTCTCTGGTTATAAAGAAGGTCACAGAGGAGGATGCTGGTCCTTACACCTGCAGACAGTTCAGATCAGGACAACATCAAGGTCCAGATACTATGGTTGTTCTGTCTGTTACCATGACTGAACAGAAGAACACTGAGGAGATACCAGGTGGGgacacaaaaccaacaaccacCGCTACCACAGCAACACCAGAATCAACACTAACAACTGAGAGCAGCATTAAATCAGGTTGGTGGTGGTGGACCATCGCTGTCTTTGTGGCTGTTGCAGCGCTCCTAATAATCACTGTGGCTGTCATCAGATGGAAGAGAGCTAAAGGGAACAAAACACTGACGTATGAAAACACGGTGCGTTATGATGTAGATGATGATACAGTGATCTATGAAAACCTCAGATCACCTGATCCACATTGTTGCTGCTGTCAGAGACTCTGCTAGTTGATCagtctcagctggacttgatTGCTGAGACGCTCAACTGATAAAGTAGAGCCGAGCGAGTGGCATGGAATTTTTAACTCCGGTGGAtctatgaggactatggttgactgcaccctagatctctgcagggtaaattgagacagctagctagactatctgtccaatcagagttttctatcGAACAACTATTTTGCAAAGGCTCCGTGCGGAGTTTAGCGCCACCCATGGCGATTCTGATTGGATTAAAGGAATGCcactaaaccagagcacgttttcctcccatccccgaatgctatgtggagtagccagatcCTTCTTCAGagcactttggaggagggtctggctgtTTGTGGACGTCTGACACACTGTCAGCCGCTCCGTTGCTCCAGCGATGGACTGACTTCACCCCCACAGTCCAATCACACATGGGCCGGTTCGGACCAGTTTAACAAGCTCAGACCCCGGGGGAGGGTCCTGACAACTCGAGAGTTAAGTGgtcacatttaaataaactgttaaatGTTTTAAGTGTAGTCCTGTCTAGTATTGTCTGTTGGCCTATTGATTGTTTATGAGTGGGTTTTAAAGCTGCAGCAACAGTAATTGACTTGTGCTAAGCTGTGTGAGAGTTAGCCAATTGGTACGGGTGGATACAAGCCTGTCTAGCCCAGGTTAATTAAATGGGGGGCCGATAGTGTAAGTGATAGTGTGCGGTGTCCTGCATTCAGTTCCTTGTGCTTGAATGCCCTTTGCAAAGTTTTGCATGTGCATATTGACTGCCGTAGTGTGGTTACCTGTATGGTTTGCTTTACTACTTAGGGGGCTGATTAGCGAGAGAGGACAGACTTGACGAAAGGGGTACGCTATAGTTTGACCTGTCTTGGCGCTGTCCACAAAGGAACTGTTGTTGCCTTATGAATTATGCATTGTTGAAAAAAGGGGCTGTATTTTTCCAGATTGGTTTGGCTAACTCAAAGTTCATTACAATATAATCtgcaaataaagaaatgttcaCCACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636969.1 lncRNA upstream 8576 29886864 ~ 29888884 (+) True LOC120546868
XR_005636968.1 lncRNA upstream 103781 29787961 ~ 29793679 (+) True LOC120546865
XR_005636962.1 lncRNA upstream 236725 29659256 ~ 29660735 (+) True LOC120546861
TU255008 lncRNA upstream 292361 29579635 ~ 29605099 (+) True G188290
TU255005 lncRNA upstream 319358 29576224 ~ 29578102 (+) True G188288
TU255051 lncRNA downstream 22148 29928842 ~ 29985502 (+) True G188321
TU255055 lncRNA downstream 25856 29932550 ~ 29932860 (+) True G188323
XR_005636975.1 lncRNA downstream 27900 29934594 ~ 29935486 (+) True LOC120546875
TU255056 lncRNA downstream 33512 29940206 ~ 30032961 (+) False LOC120546873
XR_005636974.1 lncRNA downstream 60276 29966970 ~ 29979067 (+) True LOC120546874
XM_039782100.1 mRNA upstream 14736 29876921 ~ 29882724 (+) True LOC120546867
XM_039782099.1 mRNA upstream 21636 29861374 ~ 29875824 (+) True LOC120546866
XM_039781412.1 mRNA upstream 526310 29315759 ~ 29371150 (+) True LOC120546480
XM_039782702.1 mRNA upstream 592520 29292705 ~ 29304940 (+) False si:ch211-245h14.1
XM_039781362.1 mRNA downstream 105461 30012155 ~ 30022642 (+) True LOC120546436
XM_039782106.1 mRNA downstream 122256 30028950 ~ 30083063 (+) False LOC120546869
XM_039782101.1 mRNA downstream 166754 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA downstream 166754 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA downstream 166754 30073448 ~ 30083063 (+) False LOC120546869
TU255018 other upstream 251637 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 433586 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 476733 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 585096 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 466972 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 717786 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 887525 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 947281 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1591261 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile