RNA id: TU255135


Basic Information

Item Value
RNA id TU255135
length 1730
lncRNA type read_through
GC content 0.39
exon number 2
gene id G188352
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30611681 ~ 30882446 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGGGCTTCACCCTCAGCCCTTCACCTCATAAACTGTGtgctgtttcctgtattgagcAGTAGGGCTTGAAAATGCAGCTTGGCCCACTTTTATTACTTCATCTCACTTTAAGATAGTAgattttcatttgtacagaATTATATTCCATGTAGTGCAACAGCACCGAAAATGTTCAATTTCAATGATGCAATTAACAGAACTTTCATTTCATCAAAGATTTGCAGATAAGTAACTAACTGCAGATCAGTAACCTGATGATGCACCAGATGATTTGTTACACAAAACCATCTGTGAAGTcatcattggaaactgtttggaaaagggcaggcacttaaaaaaatacctggcaggtgattggatctGTCTATAACTTCTGCCATTGTGTTTTTAACTAACAGTCTCAGGCGTCACATACACCTAAACCACAGCCCATAGATACCAGTAGCTCCATACCGGAAGCTGATTGGTTCGATAAGCTGGTAGTTGAGACACAAatgcattacttgaagcctgaaaaGATGGAGTTTCATGTGATCTTGTGATACCGCGACTATCTAGCTGCATTCAAGGTCAGCCAATCAGACCAGGTAGATGGTATTCTCTACATCCATTGGCATCTCTGACTATCCTGCCATTAAAAGTTTACATGGTATCCATATCACTCTTGCTGAGCCACATAAATACCTAAGAATTTGGCTTGACAGCAGACTGGAATTTAAGATTCATATTCAACATTTGAGCCAAATATGTTATCAAACTAGGCCTTCCATACAGAATTAAAAGGGGTATGTCTGTCTGGGGTCTGAAACCATAAAAATACTGTCAGCTTCCTCATAAAGTGTGTGTTGTCCCCCGTACATTAGggctttacatttttttaaagtagtgaAAATGTTCAACACCACTGATGTAATTAAGAAAATGTTTGTTGAATGTTTGCTTTAGAAGTGCTCATGTTCCAGCAATCGACTTTCTTCATTAGCTACTTACTATGCACGTCTGCAGAGCACAATCATCTTGAAACTATTACAAAAAGGCTTTCTTGTAAATAGCAAAattgaaatgtaatattttcatgtagacaataaacaaaaaagatatCTGAATTTTTTGGCAGTAATTGCCTTTCAGCCTGATGTTTTCCACCAGAGTACCACAGCATTAATCTTCGGGATACTCACCCCTTTCTAAATGCTTCAAACTCAAAGCtgcaaatagtcatgaaaaacaatggaaagtttgggatcattttaagtcTATTGTAAAAtcgaactagcttaccacaatagcATGCCGTCAATGCTACGTCTACGAATGCTCAGAATCTTGAAATCTGGACAAATTATTGTAAACTTAGttgctgccggagacaaaccaGGCCTCCCCGCTGGAGCGGTCAACctcatggctacttaatatgcacgtgaatgacatgATCGGACCATGCCGGTTATGTctgcattctttctcctcactcaGAATTAGCTTTCTTGAAATGTGTCCCCCTGAACAGTTCAACaacagtgtagttgaataaCCCTGCTGTAAGCTTTGTACAGTCACATTAACCTGGGcttagtgaacagctctttttcATATCCAGTGTCATGAGCCAGAGGCATGAAGGGGAAGGGGGCaaaaaagatttacatttgggccaccaaagaTTTACTTTTGCCAACAGAATAAGGGGTTTGTTGGTCCATGCAACCAGTGCTTAAAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255103 lncRNA upstream 15334 30611681 ~ 30613974 (+) False G188352
TU255197 lncRNA upstream 84045 30476757 ~ 30545263 (+) True G188374
XR_005636983.1 lncRNA upstream 128064 30499354 ~ 30501244 (+) True LOC120546896
TU255183 lncRNA upstream 193511 30411623 ~ 30435797 (+) True G188367
TU255138 lncRNA downstream 20900 30881961 ~ 30882446 (+) False G188352
TU255262 lncRNA downstream 159520 31020581 ~ 31020954 (+) True G188421
XR_005636875.1 lncRNA downstream 222410 31083471 ~ 31086840 (+) True LOC120546487
TU255283 lncRNA downstream 226749 31087810 ~ 31093393 (+) True G188430
TU255291 lncRNA downstream 238781 31099842 ~ 31100187 (+) True G188438
XM_039782129.1 mRNA upstream 294566 30324972 ~ 30334742 (+) False angel2
XM_039782152.1 mRNA downstream 2329 30863390 ~ 30872873 (+) True LOC120546900
XM_039782153.1 mRNA downstream 2329 30863390 ~ 30872873 (+) False LOC120546900
XM_039782277.1 mRNA downstream 144421 31005482 ~ 31013827 (+) True nsl1
XM_039782500.1 mRNA downstream 155876 31016937 ~ 31020412 (+) True batf3
XM_039781430.1 mRNA downstream 242684 31103745 ~ 31106524 (+) True adat2
unassigned_transcript_1091 other upstream 255570 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255018 other upstream 983485 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 1165434 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 1208581 29419376 ~ 29420727 (+) True G188207
TU254896 other upstream 1316944 29292741 ~ 29312364 (+) False si:ch211-245h14.1
XR_005637052.1 other downstream 636894 31497955 ~ 31498174 (+) True LOC120547349
XR_005637053.1 other downstream 638048 31499109 ~ 31499328 (+) True LOC120547350
XR_005637054.1 other downstream 639774 31500835 ~ 31501054 (+) True LOC120547351
XR_005637055.1 other downstream 642948 31504009 ~ 31504228 (+) True LOC120547352
TU255785 other downstream 744993 31606054 ~ 31610101 (+) False LOC120546816

Expression Profile