RNA id: XM_039781214.1


Basic Information

Item Value
RNA id XM_039781214.1
length 3670
RNA type mRNA
GC content 0.48
exon number 28
gene id si:dkey-119f1.1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19712664 ~ 19731224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCAGTATCTGTGCCgtGTGACCAAGATGTCTAAAAGGAAGAGCAGCCCTGTCAGTGACAACACCAACAAACGGGTCAAACCTGCGGTGGAGGAAGACGTGGAAGATGAAAATGTTTCTAATAGTGACCAGGAAGATCCTCTACCGAATAGACAGGTGCCATGTGCTGATGAGGTGGTGAGTGCAGGAATTGTGGAGAGCATCACACTGAAGAACTTCATGTGCCACTCTCACCTTGGCCCCTTCACTTTTGGTTCCAATGTCAACTTTGTTGTTGGCAACAATGGAAGTGGAAAGAGTGCCGTTCTGACAGCTCTCATAGTTGCTTTAGGTGGGAATGCACATGCCACCAACAGAGGATTATCACTCAAGGGATTTGTCAAGGAAGGAGAAAGCTCAGCTGATGTATCAATTACCCTGCGTAACAAAGGAAAGGATGCTTACAAACCTGAGGTGTATGGTCCAGCCATCATAGTAGACCTGAGAATAACACGTGAGGGGTTGAGAACCTATAAACTGAGGAGCAAATCAGGTCAACTTGTGTCAACCAAAAAGGAAGAGCTGTTGTCCATCCTggacaattttaacatacaGGTCAACAATCCTGTGTCAGTTCTGACTCAAGAGATGAGCAAATACTTCCTTCACTCCAAAGGAGAGGGGGACAAATACAAgTTTTTTATGAAAGCTACCCAACTGGAGCAGATGAGAGAGGACTTTACCTacatcaaaaccaccaaacatatCACGGAGGATAAAGTTGGGCAACATAGTGAATGCTTGAAAGACTTGAAGCGGAAGTACCTGGAGAAAGAAGACCGTTATAAGAACCTGGCGTCATTTGATGAAATGCAAACCAAACTGGAGGAGTTGCAGAAGCAAATGGCTTGGGCTTTGGTGATTGAGATGGAGAAGGAGTTGGAGCCAATGAAGGAGAAGCTGCAGTCAGACAGACGTTCTACAGAGAAATATGATGAGAAGGTGGATGAATGGAAGAATAAGCTCGAGGAGGCTGAGAGGAAATACAGGCAGATCCAGGAACAGTTGGAGGGGATCACACAGCAAGTCCAGGAGCTCCAGCCCAAATGTGCTGAGCTCAAAACCGGCCAGAGACAAAATACCCTTCTCAAGTCTAGCGAGGTCACTGTTCACAGATGCAAGGCTAACCTGAGGGACCTGGAAAAGGACAAGGTTCAGCTGTCTTCAAGGATAAATGATCTCAAGCTGAGCATCAGTCAGACAACTGGAGTGGAGAGCCAGGCCAAGACGGAGCGTATGGAGCAGATACAGGCTGAGCTGGAAAACATGAGACAAAAGAGTGCCACTCTTGGCCAGCAGATTGACCAGTATGAGCATGCCTGCAGCCGTGCCAAGGAAGAACAAGGAAAGATGAGGAGAGAGCAGGAAGTGCTTCAGAGGTCCATTGATGCCAACAGAAGGAACTTGCAGACTATGGAGAGCAGTCGGTCTAATCGCCTGCGGCGTTTTGGAGAGCACATGCCCGCACTCCTCAACGCCATCCAGGAAGCTCATAGAAGGGGCCAGCTCAAGCATAAACCTCGAGGACCTCTGGGTCACCTTATTAGCCTGAAGGACCCAGAGCTGGCTCTGTCCGTAGAAGTATGTCTCAAAGGCCAGCTACAGGCCTTCACTTGTGATAACCACGAGGATGAGAGGGTGCTGCAGGGCCTCATGGCCAAAGTGTTCCCAACTGGCCGTAGACCTACCATCATCACCAGTCAGTTTCTCCCAAGTGTCCACGATACAAGATCGAGGGGTGTGAATCACCCTGAATACCCGTCCGTGCTTCAAGCTCTAGAAATTGAGGACCCAGTTGTGGCCAACTGCCTGATTGATCAGAGGGGTATAGAGAGCATTCTACTCATTAAGAATCGAACAGAGGCTCGAAGACTGATGCAAGGGAAAAACCCTCCTCGGAACTGTAACCAGGCCTTTTCCAAGGAGGGAGATCAGATCTTTAATAACCGTAGTTACACCGCTGAGCAGACCAGAGCCAACTATCTCTCGGGAGATGTTGAGGAGGAGATCAGGCACTTGCAGAGGGAGATGGAGAACCAGAAAGCTCAGGCAAATCGCTTCCAGTTACAGATGAAAAAGTTAGATGAAGACGTCAAACAGAACGATGGGCTGCTGAGAAGAACCCACATAGAGCAGAGGACTACCAAAGACAAGATCACAAAGCTAGAGCTGGAGCTGACAGACCTACAAAATGTGGAAGAGTCTCAGTCAGAGGACCTCAGTCCCCTGGAGGAAGATCTTCAGGAGATTGTTACTAAGATCTCGTCCAAGCGTGCTGAGTACGAGGAGGCACGAACTAAGACGGCTGAGCTGAAGGCCTCCTATGAGAAGGCAGAGCAGGAGTACAAGCAGCACAAAGAGCAGATAAACACGGTCGCTGAGGATGCTGACCCAATCAAGGAGGAGCTGAGTAAGGCTGATCAGGAGGTGATGAAGTGCAAGCATCACAAGAAACACTATGAGGAGAAACGCAGTGCCCATCTCCGCAACATACAGACACTGCAAGTCAATCTGGAAAGCAAGGAGCAGGAGCTTCAGATTTCTGTGGCCAAGGCCACAGAAATCTGTCCAGAGCGTCTGGAAGTACGACGGACAGCCAGGAGTCTGGACAGTGAGATCAACCGGCTCAAGGTTAAGATCACTACCCAGCAGGAACAACAGGGGGACCGTGAGGAGGTTGTGAGGCAGTATAACGAGGCTCTGGAGAACTACAAGAACATGGCACAGCAAATGAAGAACCTCACCAGCTTCATCAAAAGTCTCAGTAATGTTATGAACGACAGACTCCAGGTTTACGCTGAGCTCAAGAAGTTACTCTCTGCCCGCTGTAAATACTACTTTGATAGCATGTTGGCCCAGAGACGCTACACTGGAAGTATGACCTTTGACCACAAGAATGAAACCCTCTCCATCTCAGTGCAGCCAGGCCAAGGAAACAAGGCTGACTTGAGTGACATGCGCTCTTTGTCCGGAGGCGAGCGCTCCTTCTCCACTGTTTgctttgttctctctctttgGGCCATCACAGAGGCGCCTTTCCGCTGTCTTGACGAATTTGATGTATACATGGACATGGTGAATAGGAGGATATCAATGGACATGATGCTGAAGGTGGCTGCCGGTCAGCGCTTCAGACAGTTCATCTTCCTCACCCCACAGAGCATGAGCTCTCTTCCAGAGAGTAAAAACATCAGCATCCTCCGTCTCAAAGATCCAGACCGTGGCAACAACCCAGAAAGAAGTCAAGATGAGGACCAGTAGTATTGCTGCTGGTAATTTAACATCAAATAAGTTGATGAGACCAGTAGCAGGTGCCATAACCTCCATCGATTATGTTTAAGAAGGGTTCAAGAGTGGTTCGGTTTTTAGTTCCGTCAGTGATCgaaatacaatttttttaaagttctgtCTAGTAGGCAGTGtgttaaatgttttgttctACAACGCTGAATGCAAGTACCAACAAAATGTTGTATGCACTGATGCATCGAGGGTACTGCAAAGATGGTGAAGTATTTGTATATCCACTGCTGAAATAACTGTTAAATGGCTTGACAACTGGCACGTTGAAGGAGATGATGTCATTGTaagaatttttttaatattcattaaACCAAGTTCAGATACAAA

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22804 SMC6; structural maintenance of chromosomes protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251632 lncRNA upstream 832 19711527 ~ 19711832 (+) True G185795
TU251631 lncRNA upstream 3152 19709214 ~ 19709512 (+) True G185794
TU251630 lncRNA upstream 3734 19708331 ~ 19708930 (+) True G185793
TU251528 lncRNA upstream 19608 19692136 ~ 19693056 (+) True G185716
TU251523 lncRNA upstream 60089 19652237 ~ 19652575 (+) True G185711
TU251636 lncRNA downstream 4294 19735518 ~ 19735724 (+) True G185799
TU251637 lncRNA downstream 4616 19735840 ~ 19736056 (+) True G185800
TU251639 lncRNA downstream 6770 19737994 ~ 19738264 (+) True G185802
TU251641 lncRNA downstream 7816 19739040 ~ 19739290 (+) True G185804
TU251673 lncRNA downstream 118950 19850174 ~ 19851711 (+) True G185827
XM_039781342.1 mRNA upstream 9273 19699722 ~ 19703391 (+) True LOC120546417
XM_039782313.1 mRNA upstream 64534 19633500 ~ 19648130 (+) False acp1
XM_039781219.1 mRNA downstream 13953 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA downstream 13953 19745177 ~ 19801977 (+) False fig4a
XM_039781136.1 mRNA downstream 103261 19834485 ~ 19837398 (+) True LOC120546286
XM_039782594.1 mRNA downstream 121419 19852643 ~ 19860217 (+) True kif25
XM_039781451.1 mRNA downstream 188249 19919473 ~ 19944031 (+) True cdc40
TU251521 other upstream 64508 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 173356 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 173456 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 173456 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 504568 19204154 ~ 19208096 (+) False LOC120546624
TU251678 other downstream 125511 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2213519 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2254555 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3847154 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3847154 23578378 ~ 23588514 (+) False nfkbie

Expression Profile