RNA id: XM_039781365.1


Basic Information

Item Value
RNA id XM_039781365.1
length 657
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120546439
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31582418 ~ 31586949 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCCACTGGGTTAAATATGCTGAAACGAAATGTCAGACATTAAAAACGAAAAGAAAAACTGCCACAtgcaacaacagcagctgcaaaaAAAACTTGTTATTTTCTACAAAACAAAGAGGAAGTTTCTGTGCGAGGCGTCTTTGAGACGCAGAAGAAAGCAGAAGGGTCATAAAGAACATGAGAAACAGGAAGGATGGTGTGGGTAtatatgtgcatgtatgtgttagTGTGATTTTGACTCTGTGGTCTGTTTCTGGGTCGATTGTTTCTCATAGACAGCTTCCTCCTCGGCCGAGCACCAGTCTGCTACGAAGACGCCACACGGCCGGACGTCCAGACTGCAGCAGGCTCGGCTGCAGCCATGAGTCGCCGGCGGATCTCGGTCAAAGATCTGGGGGCGTTGGACTGCCAGGGCTGGCTTCTCCGCAGGAAGGGGGGCCGCAGTTTCCTGGGAAGCAAATGGAAGAGATACTGGTTTGTCCTGAAGAAGAGTTCCCTGTACTGGTACACCAGCCAGATGGATGAAAAACAGAAGTCGATAAGATCTCAGCGAGAAAGAAACTGGTCCACGCTCGAGAGCAAACAGCCGATAATGAGCCAAGACTATGACCGCATAGTTCACACAGGAACAAGCACACAGAGTGTGAGCGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255758 lncRNA upstream 109420 31472777 ~ 31472998 (+) True G188737
TU255757 lncRNA upstream 123717 31458421 ~ 31458701 (+) True G188736
TU255734 lncRNA upstream 226913 31351448 ~ 31355505 (+) True G188719
TU255305 lncRNA upstream 273215 31295023 ~ 31309203 (+) False hivep2a
TU255316 lncRNA upstream 331300 31190402 ~ 31251118 (+) True G188450
TU255775 lncRNA downstream 4106 31591055 ~ 31591459 (+) True G188748
TU255776 lncRNA downstream 10266 31597215 ~ 31597715 (+) True G188749
TU255793 lncRNA downstream 87756 31674705 ~ 31752206 (+) True G188757
TU255799 lncRNA downstream 116082 31703031 ~ 31703647 (+) True G188761
TU255801 lncRNA downstream 121930 31708879 ~ 31710971 (+) True G188763
XM_039782029.1 mRNA upstream 6667 31507627 ~ 31575751 (+) True cnksr3
XM_039781932.1 mRNA upstream 77560 31496301 ~ 31504858 (+) True rps7
XM_039781208.1 mRNA upstream 273022 31169067 ~ 31309396 (+) True hivep2a
XM_039781206.1 mRNA upstream 275623 31182851 ~ 31306795 (+) False hivep2a
XM_039781205.1 mRNA upstream 275623 31221566 ~ 31306795 (+) False hivep2a
XM_039782030.1 mRNA downstream 20339 31607288 ~ 31614522 (+) True LOC120546816
XM_039782544.1 mRNA downstream 33459 31620408 ~ 31704363 (+) True LOC120547115
XM_039782543.1 mRNA downstream 33459 31620408 ~ 31704024 (+) False LOC120547115
XM_039781689.1 mRNA downstream 148621 31735570 ~ 31756918 (+) True cebpz
XM_039780976.1 mRNA downstream 190014 31776963 ~ 31782066 (+) True LOC120546196
XR_005637055.1 other upstream 78190 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 81364 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 83090 31499109 ~ 31499328 (+) True LOC120547350
XR_005637052.1 other upstream 84244 31497955 ~ 31498174 (+) True LOC120547349
TU255105 other upstream 727054 30853975 ~ 30855364 (+) False G188352
TU255785 other downstream 19105 31606054 ~ 31610101 (+) False LOC120546816
TU255816 other downstream 190080 31777029 ~ 31781038 (+) False LOC120546196
TU256147 other downstream 989529 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1741154 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1867047 33453996 ~ 33458768 (+) True G189269

Expression Profile