RNA id: TU256470


Basic Information

Item Value
RNA id TU256470
length 416
RNA type TUCP
GC content 0.57
exon number 2
gene id G189269
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33453996 ~ 33458768 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTGTGTCCAGGAGGCCGGCTGCAGAGCCGTGGGTGCTGATGATGTCCTGGAGCCGTCTCTTGAACTCCTCCATGGGGTCCGAGTGTTCGGAGGAGCTGCAGGCTGTAATTGGAGCCGTCACCTCACCGTTGGCGTTTTTAGCGTTCACGTCAGGCTGTGCGGCCGCCAACACTTCAGCTGCTTTCACCGACGTCTCCATCCTCGGGGGTTCTGATCAGCGGAGTGAAGGAGCGGAGGTGAAGGAGAGAcgcagagaggcagagaaaggACAGGAGAAGGAGGGTCCTGCTGACGGAAACAACGACAGCTGACCCCCCAAAAATAACCTGAGAGGCTCAACTCAcactctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256463 lncRNA upstream 9944 33441481 ~ 33444052 (+) True G189263
TU256461 lncRNA upstream 17865 33435785 ~ 33436131 (+) True G189262
TU256454 lncRNA upstream 53419 33400043 ~ 33400577 (+) False LOC120546192
TU256419 lncRNA upstream 67044 33382830 ~ 33386952 (+) True pex7
TU256415 lncRNA upstream 101473 33293820 ~ 33352523 (+) True G189228
TU256472 lncRNA downstream 35873 33494641 ~ 33494928 (+) True G189271
TU256492 lncRNA downstream 126214 33584982 ~ 33585281 (+) True G189289
TU256524 lncRNA downstream 226429 33685197 ~ 33685556 (+) False G189309
TU256527 lncRNA downstream 284740 33743508 ~ 33762216 (+) True G189311
TU256536 lncRNA downstream 289251 33748019 ~ 33751624 (+) True G189318
XM_039780971.1 mRNA upstream 37910 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 67007 33328092 ~ 33386989 (+) False pex7
XM_039782541.1 mRNA upstream 67007 33328092 ~ 33386989 (+) False pex7
XM_039782542.1 mRNA upstream 67007 33328092 ~ 33386989 (+) False pex7
XM_039780901.1 mRNA upstream 167056 33279911 ~ 33286940 (+) True LOC120546153
XM_039780949.1 mRNA downstream 171032 33629800 ~ 33666253 (+) True LOC120546181
XM_039781371.1 mRNA downstream 306585 33765353 ~ 33771402 (+) True LOC120546444
XM_039781373.1 mRNA downstream 387676 33846444 ~ 33856412 (+) True LOC120546446
XM_039781945.1 mRNA downstream 400384 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 549628 34008396 ~ 34013448 (+) False LOC120546767
TU256417 other upstream 122283 33328103 ~ 33331713 (+) False pex7
TU256147 other upstream 831732 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1672958 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1843895 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1949768 31504009 ~ 31504228 (+) True LOC120547352
TU256525 other downstream 182852 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 304697 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 306733 33765501 ~ 33771373 (+) False LOC120546444
TU256516 other downstream 400378 33859146 ~ 33860403 (+) False LOC120546766
TU256522 other downstream 473296 33932064 ~ 33939387 (+) True G189307

Expression Profile