RNA id: XM_039780949.1


Basic Information

Item Value
RNA id XM_039780949.1
length 1170
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC120546181
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33629800 ~ 33666253 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGCACTGGTGGTGGGTTTGGTCGTCTCCGTGAATAAGAACTCGTACGGCCTGCAAGAGTACGGCAAAGGAGGGCCGGGAGACGGATCCTCAAAGTTctgCTGGATCCAGAGCTCGGCTGTCTTCTACTCCACTGTGGTCTCTTACTTCTGTCTGGTGTTCCTGCTCAACGTGGCGATGTTCATCGTGGTCATGATGCAGATCTGCGGACGCAACGGCAAACGCAGCAACCGCACGCTGAGGGAGGAgGTTCTGAGGAACCTGCGTAGCGTCATCAGCCTGACCTTCCTACTGGGGATGACATGGGGCTTCGCTCTGTTCGCCTGGGGGCCCGTTAACCTGGCCTTCATGTACCTGTTCTCCATCTTCAACTCCCTGCAGGGTCTCTTCATTTTTATCTTCCACTGCGCGCTGAAAGAAAACGTCCAGAAGCAGTGGAGGAGATACCTCTGCTGCGGCCGATTCAGACTGTCTGACAACTCAgACTGGAGTAAGACgaacaccaacaacaccaagaaGGTGAGCTCCGACCACCTGGGGAAGTCTCTTTCCTCCAGCTCGTTCGGCTCCAGCTCGGCTAACTGGACGTCCAAAGCTAAAGCTACGCTCAACCCGTTCACCAAGCGCCACAGcaacacagATAAATGTTACTCCAACCAGACCGGCCCCAAGTGCGTCTCGTcgtgctcctcctcctccgaaGTGGAACCCaactcctcttcttcctcctcctcctcttcctcctcttcctccatcctcCCCGTCAGCCAGATGATCGACAAGGTGAAAGGCTACTGCTCCACGCGCTCCGACAACTTCTACAAGAACATCATCATGTCGGACAGCTTCGCCAACAGCACCAGGTTCTAAGAGAGGTCCAAGAGACATTTCTGGAGCCTCCTTCGTGATTTGGAACTGCGATGTTGGGACATCGGCCGTTTCATCGGCAGATCGGTGACGAAGGAGACTTCTGTTTAACACTGGAGCCTGCCTCGCTGTTCAGGAACTGCCCACCATGTTATTTAAGGCTTTGCTTTTGTTCAGAAAACTGTCAGCCAACAATCAAGAACATTTTGTGTCCTGGAAGTGGGAgcatgcctatgttcccacagtcctatgttcccaaagccctatggtcccacagctctatgttcccacagccctatgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256492 lncRNA upstream 44519 33584982 ~ 33585281 (+) True G189289
TU256472 lncRNA upstream 134872 33494641 ~ 33494928 (+) True G189271
TU256463 lncRNA upstream 185748 33441481 ~ 33444052 (+) True G189263
TU256461 lncRNA upstream 193669 33435785 ~ 33436131 (+) True G189262
TU256454 lncRNA upstream 229223 33400043 ~ 33400577 (+) False LOC120546192
TU256524 lncRNA downstream 18944 33685197 ~ 33685556 (+) False G189309
TU256527 lncRNA downstream 77255 33743508 ~ 33762216 (+) True G189311
TU256536 lncRNA downstream 81766 33748019 ~ 33751624 (+) True G189318
TU256523 lncRNA downstream 85795 33752048 ~ 33752677 (+) True G189308
TU256543 lncRNA downstream 90530 33756783 ~ 33757070 (+) True G189325
XM_039780971.1 mRNA upstream 213714 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 242811 33328092 ~ 33386989 (+) False pex7
XM_039782541.1 mRNA upstream 242811 33328092 ~ 33386989 (+) False pex7
XM_039782542.1 mRNA upstream 242811 33328092 ~ 33386989 (+) False pex7
XM_039780901.1 mRNA upstream 342860 33279911 ~ 33286940 (+) True LOC120546153
XM_039781371.1 mRNA downstream 99100 33765353 ~ 33771402 (+) True LOC120546444
XM_039781373.1 mRNA downstream 180191 33846444 ~ 33856412 (+) True LOC120546446
XM_039781945.1 mRNA downstream 192899 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 342143 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 344687 34010940 ~ 34013448 (+) True LOC120546767
TU256470 other upstream 171032 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 298087 33328103 ~ 33331713 (+) False pex7
TU256147 other upstream 1007536 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1848762 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 2019699 31606054 ~ 31610101 (+) False LOC120546816
XR_005637066.1 other downstream 97212 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 99248 33765501 ~ 33771373 (+) False LOC120546444
TU256516 other downstream 192893 33859146 ~ 33860403 (+) False LOC120546766
TU256522 other downstream 265811 33932064 ~ 33939387 (+) True G189307
TU256520 other downstream 299330 33965583 ~ 33986476 (+) True G189305

Expression Profile