RNA id: XM_039781945.1


Basic Information

Item Value
RNA id XM_039781945.1
length 3153
RNA type mRNA
GC content 0.58
exon number 17
gene id LOC120546766
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33859146 ~ 34000536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCAGTGGGACCAGAACCTGGAGAAACTGAACCTGGATCTGTTCCGTGTGCGCTGCTATCTGTCCAGCCTGCAGGGCGGCGAGCTGCCCAACCCCAAGAGCCTGCTCGCCGCCGCCAGCCGGCCCTCCAAGAGCATGCTGGGACGCCTGGGCGTcttctccgtgtcctccttcCATGCTCTGGTGTGCAGCAGAGACGAGGGAACGCTACGGCGACGCAGCCACTCTCTGTCGGGAGGAAGCAGCCGGAGGCGGGGCCTGCCGTCCTCTCTGAGGGCGCTGGACGCACCCAAGAGACGCAGCAGGGACGCCAGACACTCCACGGCCCAGGTGTGTGAGCAGCTTCCAGATGTTTTCACTCTGAACATCTGTCGACTCGATGCGGCCACAGACTTCGgGTTTGCGGTGAAGGGTCACGTGGACGGAGCAGGAAGGAGTCACGTGCACGTCAGCGACGTGGAGCCGCTGGGCCTGTCTGCTAGAGGAGGCCTCAGGGCAGGTGACGAGGTCCTGGCAGTGAACGGGGCGGTCCTGTCCGGTCTGGACCTGGACCTGATGCAGAGCGTCTTCAGCCACAGgaagctgcagctgctgctgcggagaGACAGGACACCGGGCCCCCCCTCTGACCCCCCCACTGACCCCCCCTCTGACCCCCCCTCTGACCCCCCTGCTGACCCCTGCCAGCCCCCGCACCCCCACAGCTGGACCAAGACCTGGACCAAGACCTGGACCAACACCGATCCTCCAGACGGCGCCCTGCTTCCCGTTTGGGACAGCCCGTCATCCCAGCGGTCCCAGGACGGCGAGCTGCAGACACAGGACGTGGGGCGGGTTCACGCCCTGTACCAAACGTTCTCAGAGCGCCGAGCGCCGGACGCCAACGCTCCCAGGAACCCGTACGGCCCGCAGCACGCCGGCGGCTCTGCAAGCCCCGCCCACCTGAGCGTGTGTCAGCGCCTGCGCCGAGTCATCGAGGAGCTGGTCGACACCGAGAAGTCCTACGTCAACGACCTGGTGTGTCTCTTTGACCTCTACCTGACTCCGCTGCAGAAGGAGACCTTCCTCAGTAAAGAAGAgATGGAGGCGCTGTTCGGCAGCCTGCCGGAGATGTTGGACTTCCAGAGAGTCTTTCTGCAGAACCTGGAGGAGAGGATCGCCTCCTGCCCCAACTTCAGCCACCTGGAAACCCCCGCGCAGTTCAAGAAACTCCTCTTCTCGTTGGGCGGATCTTTCCTCTACTATGCCGACCACTTCAAGCACTACAGCGGCTTCTGTGCCAACCACATCAAAGTCCAGAAAGTTCTGGAGAGAGCGAAGACAGACAGCGCCTTCAAGCACTTCCTGGAGGCGAGGAATCCGACCAATCAGCACTCGTCGTCTCTGGAGTCGTACCTGATCAAACCTGTTCAGAGAGTCCTGAAGTATCCACTGCTGCTGAGAGAGCTGGTGTCTCTGACCGACCCCGAGAGCCCCGagcacacacacctgacagAGGCGCTGAGAGCGATGGAGAAGGTGGCGACTCACATCAACGAGATGCAGAAGATCTACGAGGATTATGGCTGCGTGTTCGACCAGCTGGCCGCCGAGCAGAGCGCGCCCGACaaacagGTGACTGACATCTCCATGGGGGAGTTCCTGGTCCATTCGTCGGTGGTTTGGCTGAACCCCCTTCCCTCTCTGGGACGCCTGAGGAAAGAACCGGAGCTCACGCTGTTCGTGTTCAAACGGGCCGTCATCCTGGTTTACCGTGACAACAGCAAGCTGAAGAAGAGGAtgACGGGCTCTCGCTCAGCTGATCTGGACCCCTTCAGGTTCCGCTGGTTAATCCCAGTGTCAGCGGTTCAGGTCCGACCGGCCAACATCACAGgctcAGAGAACCAGTGTGTGTGGGAGCTCGTTCACAGCCGGTCGGAGGTCGAGGGACGACCGGAGACGGTGTTTCAGCTCTGCAGCAGCGGTTTGGACACGAAGGCGAGCGTGCTGCGAGCTCTGCGCTTCCTCCTCCGAGAGCGAGCGCCGGCCGCCAGCTCCCTGAGGAGGAGGCAGCAACGATGTCATTCCGAAACCCACGGGACgtcccatcatcatcatcatcatcatcatcatcatgagcGCTCAGTTCTGGGAGAAACCTGCTCGGAGCCTCTGCTGCCGAGCCGAGCCAATGCTGCAGGGAAGAGAACGAGGCTGCGCTCGCTGACCGGCGAGCTCGAGGCGCAGCTACAGAGGCTCAACTTCACCGAAGAGGAGGACACGGAGCGAGGAACGCCGCCGGCAGCGCTGCTAGCGTGTCATAGCGGCTGCAGGAGAAGGCGGAGCTCCAGTCTTCGCCGGAGCCCTGGCGGAGAAGCGCTGGACGGCAGCAGCCCGCTGGAGAGAGACTTCAGCGTTCAGAGCATGACCTCCATGATTAACGAGGACTGCTTCTACGACAGCGTGCTGGGGATGCAGAAGGCTGCTTATCACACGCTACagagctaacatgctaacgttaTCACACGCTACAGAGCTAACATGCTAACCTTAGGGGTGTAGTGCTACCGGAGAGCGCGTCTGTcctagtcagtccctccagaaatcACACAAATAGCGCCACACCCccagctaacatgctaacgtgGAAGAGGAGGCTGACGTTAGAGCTACTAGACTACTGGAGCCCCGGGAGAGGAAACTAAACTCCAGACACTGCAAACCGTTCATCAGACCTGCAGAAGTTGTCACATCAACATATGACGAAGGATTCACTCAGACGTGAACTCCTAAACACACTGCTGACTTTCATCTCGACAACATCACGGACGTCTGGGGGACATTTGGGATATCACAACCTCTGGCTGCCGCGATAACAACAATAATTCctacctcacacacacagacacacacacacacacacatatacagacagacacacacacacagacagacagacatttttgAACCTCACATGCGAACAAATGCAAACTGGAGTAATTTTGTAAAACAGCCATGTGAAGGAACTCAAGttaaaaattattatattaacACTGTGAGAAGAAACTTAATCTCATAAAATATTTCAACTCTATagaggccctatgttcccacatttttcttaaaattaggccctatgttagggttagggttacattccatctgtagtccatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256566 lncRNA upstream 3683 33853678 ~ 33855469 (+) False LOC120546446
TU256546 lncRNA upstream 27549 33760348 ~ 33831603 (+) False G189327
TU256545 lncRNA upstream 27549 33830952 ~ 33831603 (+) True G189327
TU256514 lncRNA upstream 31781 33814904 ~ 33827371 (+) True G189299
TU256547 lncRNA upstream 86043 33772638 ~ 33773109 (+) True G189328
TU256710 lncRNA downstream 46075 34046611 ~ 34047007 (+) True G189439
XR_005636834.1 lncRNA downstream 69065 34069601 ~ 34071742 (+) True LOC120546208
XR_005637028.1 lncRNA downstream 79723 34080259 ~ 34096714 (+) True LOC120547081
TU256727 lncRNA downstream 100975 34101511 ~ 34102289 (+) True G189450
XR_005636863.1 lncRNA downstream 102207 34102743 ~ 34104308 (+) True LOC120546319
XM_039781373.1 mRNA upstream 2740 33846444 ~ 33856412 (+) True LOC120546446
XM_039781371.1 mRNA upstream 87750 33765353 ~ 33771402 (+) True LOC120546444
XM_039780949.1 mRNA upstream 192899 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 443066 33399801 ~ 33416086 (+) True LOC120546192
XM_039782541.1 mRNA upstream 472163 33328092 ~ 33386989 (+) False pex7
XM_039781947.1 mRNA downstream 7860 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 10404 34010940 ~ 34013448 (+) True LOC120546767
XM_039781374.1 mRNA downstream 18095 34018631 ~ 34035953 (+) True LOC120546447
XM_039782426.1 mRNA downstream 36520 34037056 ~ 34052641 (+) True LOC120547053
XM_039782425.1 mRNA downstream 38026 34038562 ~ 34052641 (+) False LOC120547053
TU256542 other upstream 87779 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 95526 33763465 ~ 33763626 (+) True LOC120547364
TU256525 other upstream 173596 33641620 ~ 33685556 (+) True G189309
TU256470 other upstream 400384 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 527439 33328103 ~ 33331713 (+) False pex7
TU256875 other downstream 462372 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 482328 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 485888 34486424 ~ 34487177 (+) True G189570
XR_005637062.1 other downstream 518752 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 524352 34524888 ~ 34525026 (+) True LOC120547361

Expression Profile