RNA id: XM_039781451.1


Basic Information

Item Value
RNA id XM_039781451.1
length 2177
RNA type mRNA
GC content 0.47
exon number 15
gene id cdc40
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19919473 ~ 19944031 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGCTTCCGGCAAATTCACAACATCCAAGATGTCTGCCACCGTGGCTTCCCTCGTTTCGTACGGTAGCGATTCTGATTCAGAAAATGAGTCGAATTTGAATACAGATGTTGAGAAAGTGGACCTAGCGGACCCGGACACCATGGCTCACCTTAAACCTCTAAAGTCTGTACCCACGATGTCCGTGGCTGTTCTCAATTCTGCTCCCGAGGTCGCTGTTAAAGAGGCTGTTGAGACTGGTACACACCTGGacccttcattgaaagaagtcACCTACAACCCGACATTTGAGACCATGTTTGCACCAGAGTTTGGGCCAATAAACCCATTTAAAAGCCAGCAGATGGCTGCCCCCAGGAACATGTTATCTGGCTATGCAGAACCTGCTCACCTCAACGACTTCATGTTTGAACAGCAAAGGAGGACCTTCTCCACCTATGGTTATGCTTTAGATCCATCTGTTGACACACACCAGGTATCCTGTAGTAGCTACATTGGTGCAGTGGATGAGGCTGAGAAAAATAAAGGACTAACTGTGTTTGAGAGCGGACAGAAGAAGtcagagaaaaggaaaaagatcAAAGGTGGAGAAGCAGGAGAGATTGACAACTTCCTTGGACCATGGGCAAAATATATAGACGAGAAAGATGGGGCCAAACCGTCAGAGgaagaGCAGAAAGAGCTGGATGAGATCATAGCCAAGAGGCAGAAGAAGGGAAAGAACGAAGAAGATGCCCCTGCAGAAGAGAAGACTATTCTCCATGTTAAAGACATGTATGATTACCAGGGCAGGTCCTACCTCCATGTCCCACAGGATGTGGGCATCAACCTGCGTTCTGCAGATGCTCCCGACAAGTGTTACCTGCCTAAGAAACAGATTCATGTCTGGTCTGGACACACCAAGGGTGTCAGTGCTATCAGACTATTTCCTAGCTCTGGTCATCTACTGCTCTCCTCCTCCATGGACTGTAAGATCAAGCTGTGGGAAGTGTACGGCGAGAGGAGGTGTATACGCACATTTATTGGTCACAGCAAAGCAGTGCGAGACATTTGTTTCAACAACACTGGGACCCAGTTCCTCAGCGCTGCCTATGACCGCTACCTCAAACTCTGGGACACTGAGACAGGCCAGTGTATCTCCCGCTTCACCAACAGGAAGGTACCGTACTGCGTCAAGTTCAACCCAGACGAGGACAAACAGAGCCTTTTTGTGGCCGGCATGTCGGATAAGAAGATTGTTCAGTGGGACATCAGGACAGGCGAGGTGGTTCAGGAGTACGACCGTCACCTGGGAGCCGTCAACACCATCACCTTTGTGGATGAGAACCGTCGGTTTGTCAGCACGTCGGACGACAAGAGTCTTCGAGTTTGGGAGTGGGACATCCCTGTGGACTTCAAGTACATTGCCGAGCCTAGTATGCACTCTATGCCAGCTGTGACACTCTCTCCCAACGGTAAATGGCTAGCGTGCCAGTCTATGGACAACCAGATTCTGATCTTTGGAGCCCAAAACCGCTTTAgactgaacaagaagaaagttTTCAAAGGCCACATGGTGGCTGGCTATGCCTGCCAAGTGGATTTCTCCCCAGACATGAGCTATGTGGTGTCAGGAGATGCGGATGGAAAACTGAACATTTGGGATTGGAAGACCACCAAGCTTTACCACAGGATCAAGGCTCATGACAAGGTGTGCATCAGTGCGCTATGGCATCCGCATGAAACCTCCAAGGTTATCACCTGCGGTTGGGATGGACAAATCAAACTCTGGGACTAGATCTGttctggtgtgtgtttttggttggGGGTGGTCTGGGAAATGGTGGACCGACCCTAACTGGTTCACTATAGAGATACTGAAAGGGACTGCTTGTCCCATGGATTTTGTGAAAGCCACAGGACTGGTATCCAGTCTTATTGTAGCAGCGTATTTTTGTATCCTGTCACGAGAGTTCAAAGTATGTATTATCTGTACAAAGATGGCCACAAGCATACTTTTAAAAATAGTTTCTACTGCAAACGGAATATAAGAGGGGAACCttggcattttttaaatatcttttttttgttttaatttgcgattTGTGGAGTATACCTCTGTaatcattggtaaaaatgtctttcatttttaattgtgtAACCATCCCTTTGTGGAAATAAACATTCTGTAAATTTCA

Function

GO: NA

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251673 lncRNA upstream 67762 19850174 ~ 19851711 (+) True G185827
TU251641 lncRNA upstream 180183 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 181209 19737994 ~ 19738264 (+) True G185802
TU251637 lncRNA upstream 183417 19735840 ~ 19736056 (+) True G185800
TU251636 lncRNA upstream 183749 19735518 ~ 19735724 (+) True G185799
TU251724 lncRNA downstream 1062 19945093 ~ 19980090 (+) True G185869
XR_005636880.1 lncRNA downstream 6580 19950611 ~ 19973343 (+) True LOC120546509
XR_005636841.1 lncRNA downstream 317754 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA downstream 317754 20261785 ~ 20288756 (+) False LOC120546242
XR_005636839.1 lncRNA downstream 317754 20261785 ~ 20286864 (+) True LOC120546242
XM_039782594.1 mRNA upstream 59256 19852643 ~ 19860217 (+) True kif25
XM_039781136.1 mRNA upstream 82075 19834485 ~ 19837398 (+) True LOC120546286
XM_039781219.1 mRNA upstream 88630 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA upstream 117496 19745177 ~ 19801977 (+) False fig4a
XM_039781214.1 mRNA upstream 188249 19712664 ~ 19731224 (+) True si:dkey-119f1.1
XM_039781448.1 mRNA downstream 33833 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA downstream 33833 19977864 ~ 19992886 (+) True slc22a16
XM_039781449.1 mRNA downstream 38370 19982401 ~ 19992886 (+) False slc22a16
XM_039781446.1 mRNA downstream 39243 19983274 ~ 19992886 (+) False slc22a16
XM_039782179.1 mRNA downstream 673219 20617250 ~ 20622631 (+) True LOC120546927
TU251678 other upstream 59268 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 271317 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 380165 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 380265 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 380265 19429596 ~ 19539208 (+) False nhsl1b
TU252459 other downstream 2000712 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2041748 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3634347 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3634347 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 4135572 24079603 ~ 24083104 (+) True G186975

Expression Profile