RNA id: XM_039781670.1


Basic Information

Item Value
RNA id XM_039781670.1
length 3002
RNA type mRNA
GC content 0.45
exon number 13
gene id brox
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9003269 ~ 9020428 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTACTCCGTGTTTATTTCCGGAACTAAGTTGTTGTCAGTGTCAGACTTTCAGTAAGGACTGTCAAACCTCAAATCTACAGCGCCGGAACGACAGGATGGCACATTGGTTTCACCGAAACCCACTGAAGGCAACAGCGCCGGTTTCCTTTAATTTTTATGGAGTGGCAGGGAGCCCCGCTGCCAATAAGATATGCAATGACCTGAGGACAACCAGGGCGAGACTGCTGGAGATGTTCACTGATGTCACCTGCAACCCTGAGATCATGAAAAATGCCACGGACGCATACTTCTCCCTCCTCCAAGGATTTATCTTATCCTTGGATGGAACTACACAGGAGAACAAGATGAGGTTCATCCAGAACTTCAAGTGGACTGACACCTTACAAGGAAACACACCAAGTGCCCAGCAGGATGCAGTCTTTGAACTGGTCTCCATGGCCTTCAATGTAGCCCTCTGGTACACCAAGTTTGCCTCGAGACTAGCCGGGAAAGAAAaCGTATCGGAGGCTGAAGCGAAAGATGTTCACCGGAGCCTGAAAGTTGCTGCTGGTATATTCAAAACCCTCAAGGAGGCCCACATCCCTCGACTCATCACCCCGGCCGAAAAGGGCCGAGACCTGGAGCCCAGAGCCATCGATGCATATATCATCCAGTGCCAAGCAGAGGCGCAGGAAGTGACCATTGCCAGAGCGATTGAACTGAAGCACAACGCCACGCTCATCGCAGCATTGGCATTCGAGACGGCAAACTTCTATCAAAAAGCTGACCACACGTTGAACACCTTGGAGCCAGAGTGCAGTAGCAAATGGAGGAAGTACTTTCAGCTGAAGCAGCACTTTTACATGGCTTATGCATACTGCTATCATGGACAGACACTGCTGGCGAGTGACAAGTGTGGCGAGGCTATAAGATCTCTCCAGGAGGCGGAAAAGTGTTACTCCCGTGCCGAGGCGCTGTGTAAAGAGTATCGTCAGACCAAAGGCCCCGGCACCACAGCCAAACCATCAGAGCAGCTGTTCTTCCTCAAACTGGGCGGCCTGATTAAAACCACACTGGACAAGTGCCAGAGAGAAAATGGCTTCATATACTTCCACAAGGTCCCAGCGGAGCCGCCCCAGCTGGAGCTGAAGGCGAGCTACGGCCTGGCTGAGCCGGTCCCCTTCGAGCTGCCGCCGCTCAGCGAGCAGTGCACTGCTGAAGTCTACGCCACCTTCGACCTGACCAAGGGAGCCAAAAACGACAAGGCCAAGCCCAAGGAGGTGGAGGTGACACCCATGAAGGAGCCAGATCTGAAGCCTCAGAAGGACACAGGCTGTGTCCTCTCCTAAACCCTCCACGTTCCATTTTCAGCCTTATGCTTCAGTACCATctattgtagaaaaaaaatccatatatcttttttgtgtaaACCTCATCTTTTTTGGCAACATGAATCCATGGTGTTTTACATGTATGCTGAAACGTGTATTGTATTTGGGTATGACAGTCATTGTCTTTGCATTTAAGCCAGTGCCAGGCCTCCTCTTAGGCCTTTTAACAGCACACAGATTATCTTAAAGTAAACTTCAAACATTTCAAAAGATGCAAAGTTCTTTTAGGTCATTGTTAGTAACTAGAAAATGcgtttcctgcagaaaatgcgtgtgaatgctgaaaagctgtCACTACACTGAATTGCTGGCTTAAATGTGTTCGAAGAACTCCGAATGTATGAAAGATGTGGAACATTTTAAGGTTTGAAATGCATATTGTATTTGGGTGTGACCGTCTTTGCATCTAAGCCAGAGCCAGGCCTCCTCTTAACAGCACACAGATTCTCCTTAAGTAAACctgaaacatttttaaagatGAAAACTTTCAGTTTATGGTTAGCAATTACACGTCCGCTGAAATGATTCCTTTGGAATAGGTTTTTACACAGGGTTATTTCAAGTACGACCATCAATAAGCCTTATTGGTGAAGTAGTCCTATTAATGGTGCCTTTGGCTGCAATGTAACGCTGCTCACTGTGGCCTCCTACAGAAGTGTCTACAGGGTTTTAAATGGTTTGGCACTGGAGTGCACTGGAGTGCTCTGGTCTGAATTTAAATGACCCAAATAACAAAAAGGGGCCTATAAAAACATGCTGAACATGGCCTCAGGATATGGATCTAAACAAAAGATGCAGTAGTAGCATCTGACAAGATTTTCAAATTGAATTCCCCTCCCCACACTACATAGACCAAGATGCAACCATCCAGGATAGATAATTGTAGGGAATTCCGACAATCGGCCTGTATTCCAAAAATCTTTTTAATGCATTTCAAGCTGCGATTTGATCCGAACGTCctcataaaacacattaatgatAATAAACAGAACTGAAATGTAAATCAAAGACGGACAGACAAAATGAACTGCCCGTCTTCgctggttttgtttgttttagctgTAGCCGTTTAACAATCAATACTTTATTTACATCACACGACGTAATGTACTGTAGCTCTTTTTGTACATGACAAGATGTAgctgtctattttttttttttacttcatttgAGAAAAACTTTCTTACTGGATGAGGCTGAATCTTTCTTTAACATGCTTAGGGATTCTGGGATGGATCCCTGTTAATAGTAGTTCttaatttattttgattatataATGATATTTTTAGTTGGCAAACACTGACCGTATACAGTTCTATGTTACTCCAAATCACATGTTTTTGGTGATGTTGATTTTTATGTTTCTGTGGATGCACCGGAACGCCCGCTGATTACATACAGTAATGTGCTTACTCTTGTGAACTTGTCAGTCGCTGGAAGAGAGTGCTGTTGTCAATAGTTGAGGcgatatactgtacatctatCGAGTGTTACCCCCTTCCTCAAAGACAAAGATGAGCGTTATCAGATCGGGAGCTGGGAGTTcctaaaagttattttatgtgCTGCTGACAGAAGTTGTCAAAACTCTACCGCTTTTGAAAATAAAGTCACGTCGGTTAAAGCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248059 lncRNA downstream 4441 8998575 ~ 8998828 (-) True G183136
TU247969 lncRNA downstream 231684 8771288 ~ 8771585 (-) True G183068
TU247940 lncRNA downstream 523923 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 571595 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 757504 8245565 ~ 8245765 (-) True G183013
TU248075 lncRNA upstream 560 9020979 ~ 9024565 (-) False LOC120546609
XR_005636853.1 lncRNA upstream 77952 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 106302 9126721 ~ 9129230 (-) True G183175
TU248119 lncRNA upstream 113117 9133536 ~ 9134536 (-) True G183177
TU248120 lncRNA upstream 114126 9134545 ~ 9134808 (-) True G183178
XM_039780981.1 mRNA downstream 2949 8998892 ~ 9000320 (-) True LOC120546203
XM_039781021.1 mRNA downstream 11901 8961680 ~ 8991368 (-) True LOC120546235
XM_039781110.1 mRNA downstream 52866 8935924 ~ 8950403 (-) False mep1a.1
XM_039781109.1 mRNA downstream 52866 8935924 ~ 8950403 (-) True mep1a.1
XM_039782894.1 mRNA downstream 71776 8917513 ~ 8931493 (-) True LOC120547332
XM_039781668.1 mRNA upstream 541 9020960 ~ 9024116 (-) True LOC120546609
XM_039781916.1 mRNA upstream 134605 9155024 ~ 9288203 (-) False disp1
XM_039781915.1 mRNA upstream 134605 9155024 ~ 9287977 (-) False disp1
XM_039781917.1 mRNA upstream 134605 9155024 ~ 9199285 (-) True disp1
XM_039781918.1 mRNA upstream 134605 9155024 ~ 9198799 (-) False disp1
TU247995 other downstream 216052 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 978225 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1236883 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1969867 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1971546 7031647 ~ 7031723 (-) True trnak-uuu_20
TU248116 other upstream 109154 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1079184 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1481501 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1500298 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 2353689 11374108 ~ 11374615 (-) True G183650

Expression Profile