RNA id: XM_039782158.1


Basic Information

Item Value
RNA id XM_039782158.1
length 1930
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120546904
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30826759 ~ 30830636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCAAACACTCAGAGGCAAAAGCAGCAGCATTCTTTCTACTTCTTCTCTTTCACTCCCACAAGGAAGGACCAATCACAGTACAGCAGGGAGTGGGGAGATTACTGCGGTTTACTTAGGGTTAGTTTTGGTATCCCTCTTTACAGAACactcacagaagtaaaggctccAGAAGGAAAcatattttgtctgtgaagtAGGAATTTTAGGACACGTTTTTAAAGTCATGGGGATATTAGATTTCTTTCTCCAGTCCTCCAGCTCTATCTCCCTGTTGGGGGCTCTGCTGGTCCTGCTGCTGGTCTACCTTGTCTCATCCTCCAGCTTCAGCTCCCAGAAGGAGGGAAAGGAACCTCCAGGACCAAGACCGCTTCCAGTACTCGGGAACCTGCTGCAGCTTGACCTCAAGAGACCCTACCACACATTACTGAAGCTTTCCAAGAAATATGGATCGGTGTTCACTGTCTATTTTGGACCCCAAAAAGTGGTCGTCCTGGCTGGATACAAGACGGTGAAGGAGGCACTTGTAAATCATGCTGAAGAGTTTGGAGACCGAGGTGAAATCCAAATTGTGAAGGACATTAATAAAGGACATGGGGTTTTATGGTCCAATGGTGATTCGTGGAAAGAGATGAGGCGCTTTGCTTTGACTAACCTGAGAGACTTTGGGATGGGCAAGAAGGCAAGTGAGGACAAAATCATTGAGGAATGTGAACACCTCATTGGAAAGTTTAAGAAATTTAAAGGTGAAGCTTTTGATACGACCCAACCAATAAACTATGCAGTCTCTAATATTATCTGCTCCATTGTTTATGGCAGCAGATTTGAATATGATGATCCAGAGTTTACATCCCTGGTAGATGGAACAAACAGAAACATTCAACTTGTGGGCTCCCCGTCAGTACAGgtgtATAACATGTTTCCATGGATTGGTAAATGGGTTACTGTGAAGAAGGAAATCGATGCAATATTTGCTGCCAACAAGAAACAGAACTTACAGCTGTTCAGTCGTTTGAAAGAGACCCTCAATCCACAGATGTGCAGAGGCTTTGTGGACGCCTTTCTGGTCCGAAAGCAAAATCTGGAGGTATCTGGGATTGCCAACAGTCACTTCCACGATCACAACCTTCTGCAGACAGTTCTTAATCTCTTTGCTGCTGGCACTGACACAACAGCAACTACACTGAGGTGGGGACTTCTGTTAATGGCCAAAAATCCCAAAATACAAGACCAGGTCCAGGAGGAGCTGAGCAGGGAGATAGGAAGTCGTCAAGTGCAGGTTGAGGACAGGAAGAACCTGCCCTTCACCGACGCTGTCATCCATGAGACACAGAGACTGGCCAACATTGTCCCAATGGCATTGCCTCACAAAACGAACCAAGACATCACCTTCCAGGGTCACTTCATTAAGAAGGGGACCACGGTATATCCTCTCTTGACATCTGTCCTGTATGATGAGAGTGAGTGGGAGAGGCCACACAGCTTTTATCCTGCTCACTTCCTGGACAAAGACGGGAAGTTTGTCAAGCGGGACGCCTTCATGCCTTTTTCTGCAGgtCGCAGGATTTGTCTCGGAGAGAGTCTGGCCAGGATGGAGCTCTTCATCTTCTTCACCAGCCTCCTGCAGCACTTTCGTTTCACTCCTCCTCCTGGAGTTTCAGAGGATGAACTGGATCTGACTCCACGTGTGGGCTTCACCCTCAACCCTTCACCCCATAAACTGTGTGCTGTTTCCTGTATGTGAGCAGTAGTGCTTGAACATGTTGCTTGGCCCACTTTTATGACTTCAACTCACTTCAAGAGAGTAGATTTTCATTTGTACAGCATTATATTCCATGTAGTGCAACAGCACTGAACATTTTCAATATCAATATAAGGCAGcacagtggctcagtggttagcacttctgcctcacagcaagaaggttctgg

Function

GO: NA

KEGG:

id description
K07423 CYP2W1; cytochrome P450 family 2 subfamily W1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255124 lncRNA upstream 5373 30621262 ~ 30821386 (+) False G188352
TU255158 lncRNA upstream 12974 30783618 ~ 30813785 (+) True G188353
XR_005636996.1 lncRNA upstream 188688 30635414 ~ 30638071 (+) True LOC120546922
TU255103 lncRNA upstream 212785 30611681 ~ 30613974 (+) False G188352
TU255197 lncRNA upstream 281496 30476757 ~ 30545263 (+) True G188374
TU255138 lncRNA downstream 51325 30881961 ~ 30882446 (+) False G188352
TU255262 lncRNA downstream 189945 31020581 ~ 31020954 (+) True G188421
XR_005636875.1 lncRNA downstream 252835 31083471 ~ 31086840 (+) True LOC120546487
TU255283 lncRNA downstream 257174 31087810 ~ 31093393 (+) True G188430
TU255291 lncRNA downstream 269206 31099842 ~ 31100187 (+) True G188438
XM_039782154.1 mRNA upstream 5478 30814853 ~ 30821281 (+) True LOC120546901
XM_039782159.1 mRNA upstream 14307 30794219 ~ 30812452 (+) True LOC120546905
XM_039782161.1 mRNA upstream 152786 30669756 ~ 30673973 (+) True LOC120546909
XM_039782125.1 mRNA upstream 492017 30325887 ~ 30334742 (+) False angel2
XM_039782157.1 mRNA downstream 7095 30837731 ~ 30850277 (+) True LOC120546903
XM_039782156.1 mRNA downstream 14419 30845055 ~ 30850277 (+) True LOC120546902
XM_039782152.1 mRNA downstream 32754 30863390 ~ 30872873 (+) True LOC120546900
XM_039782153.1 mRNA downstream 32754 30863390 ~ 30872873 (+) False LOC120546900
XM_039782277.1 mRNA downstream 174846 31005482 ~ 31013827 (+) True nsl1
XR_005636985.1 other upstream 14616 30794219 ~ 30812143 (+) False LOC120546905
TU255132 other upstream 167478 30624480 ~ 30659281 (+) False G188352
unassigned_transcript_1091 other upstream 453021 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255018 other upstream 1180936 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 1362885 29461849 ~ 29463874 (+) True G188268
TU255105 other downstream 23339 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 667319 31497955 ~ 31498174 (+) True LOC120547349
XR_005637053.1 other downstream 668473 31499109 ~ 31499328 (+) True LOC120547350
XR_005637054.1 other downstream 670199 31500835 ~ 31501054 (+) True LOC120547351
XR_005637055.1 other downstream 673373 31504009 ~ 31504228 (+) True LOC120547352

Expression Profile