RNA id: XM_039782360.1


Basic Information

Item Value
RNA id XM_039782360.1
length 5566
RNA type mRNA
GC content 0.53
exon number 33
gene id LOC120547016
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14335639 ~ 14359390 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAATTCAGCGTTGTACAAGGCGACATCAGTCCAGAAGTGGTGGGAAGCTGCAGGAGAAGCGCTTCACGTGAAGCGACAGGCGGCCGCAGACCGAGAGGAGAACAGTAACCCACTCAAGAGATTAACGTCCACATGTCCCGGCAGCAGGAACACTGTCCGAGTTTGTAAACCTCTCTAGTGTGTGTTTGGTGGCGGGATCAGGCTTCATATTCGCTTCTTCAGCCCTGCATGCACACTCTTGGCCGGTGGCTTGTCACAGTGGATGGTCAGCAGTTCTCCGAGCGGTGCCACAAAATGTCCGGTGATGGCTTCACGATTAAAAGTCGCCTCAGGAATTTGCTGCGTTCTCCATCAACCAAGCACAAAAAGAACAGGAAAGAGAGTCTCACCAGCAAGGTGACTTTGGAGAAGGTGCTAGGAATCACAGCTTCAGGAAACAGTGGTCTGGCCTGTGACCCCCGATCTGGACGAGTGGCCTACCCTGCAGGGTGTGTCGTAGTTTTGCTGAATCCCAAAAAGAACAGACAGCACCACATTATCAACACGTCCAGAAAGACCATCACAGCTCTGTGCTTCTCCCCCGATGGCAAGTACTTGGTTACAGGAGAGAGCGGTCACCTGCCAGCGGTGAGACTGTGGGACGTGGCAGAACGGAGACAGGTGGCGGAGCTCCAGAAGCACAAATACGGCATCTCTTGCGTGGCTTTCTCCCCCAACAGCAAATACGTTGTCAGCGTGGGAAACCAGCATGACATGATGGTCAATGTCTGTGCGTGGAAGAAAAATATCGTTGTGGCTGCCAACAAGGTGTCCAGTAAGGTGACAGGTGTGTCTTTCTCTGAGGACAGCTCCTACTTTGTAACTGTGGGGAACAGACATGTCAAGTTCTGGTATCTGGACCACTGCAAGGCCAGCAAGGCCAGTGCTCCTGTCCCCCTGCTGGGCCGCTCCGGGCTGCTGGGGGAGCTGAGGAACAACTTCTTCTGTGATGTGGCCTGTGGACGGGGCTCTACATCTGACTCCACTTTCTGCATCACCTCCTCCGGCCTGCTGTGCGAGTTTAACAGCAAGAGGATGCTGGACAAGTGGGTGGACCTACGGACGGGCGTGGCCCtggctctgtctctgtctgaggATATGATCTTCTGTGGCTGTGCTGACGGAACGGTGCGAGCCTTCAGCCCCGCGGACCTTCACTTCGTCTGCACGTTGCCGCGGCCGCACCCCCTCGGCTCTGACGTCTCGGCCATCACAGAGGCAAGCCACCTGTTTTCCACCAAGACGGACGCCCGCTACCCAGACGCTATTGCTGTTACCTATGACCCTGTCGGCCAGtggctcagctgtgtgtataATGAccacagtgtgtatgtgtgggatgTGAGAGATGTCAACAGGGTGGGGAAGGTGCACTCTGCCCTCTTCCATGCTGCCTGTGTCGGGGACCTGGAGATGTTCCCAGATGTTCCTGGGAAATTTGGTGCCAGCCTGTCATCAGGAGCATTCCTTAGTTGCTCAGCCGATAACACCATCAGACTGTGGCGCATGGACGATTGGACAACTCGTGTTCATTCTCAGAACATCCTCAGCAGTGATCTCCTGAATATCATCTACATAGACGGAAACACTAGTGCCTTGCTGGATCCAGAATGTTTGACGAATATGAATGTCGACAAAACAGGAGATGGACAGACAGCAGAAAGCAGGACCGGCATCAGGACCATCTGTGTCAGTCCAGACGGAAAACACCTGGCATCTGGAGATCGCAATGGGATGCTGAGGGTTTACGACCTCAGTGGCCTGGTGGAGATTCTGAAGGTGGAGGCCCATGATGCTGAGATCCTCTGTCTTGAATACAGTAAACCAGAAACagGTCTGAAGCTGCTGGCCACAGCTAGCAGGGACCGTCTGATCCATGTCTTGGATGCTGAGGCTGACTACAGTCTGGTGCAGACACTTGACGAGCACTCTTCATCCATAACAGCCGTCCGCTTTGCTGCCAATGACAACAAGGTGAGGATGATCAGCTGTGGGGCGGACAAGAGCATCTATTTCCGCACTGCACACAAGACTGACAGAGGAACAACGGAGTTCAGGTGTTCTCACCACACGGTGAGCAAGACCACGCTGTACGACATGGGTGTGGACCCCACCTGCAAGTACGCTGCTGTCGGCTGTCAAGACCGCTGCgtcagGATTTTCAACATCAGCAGCGGCAAGCAGAAGAAACTCTACAAGGGCTCGTTGAGTGAGGACGGCAGTCTGCTCAAGGTTCAGCTCGATCCGTCAGGTCAATACGTGGCCACCAGCAGCTCCGATAAAAATATCAGCATCTTTGAATTCTCCACTGGGGAGTGTGTCGCCACTATGGATGGACACTCTGAGATTGTCACTGGGATGAAGTTTACCAATGACTGCAAGCATTTGATTTCTGTGTCAGGGGACAGCTGTATCTTTGTGTGGCGACTGGCTCCAGAACTGACAATCAGCATGAGAGAGAGGCTCTGCCAGCTCCGACAAAACCCAAACGCGCACCCCTGCAAGACCTCCAGTCTCAGGCGAGAGGTGTACAGTGCCCCCACTCTGGGTGGTCTGTCCTCTGACAGCGACCGCGAgcacgaggaggaggaggacggagCAGAGAACGACGACCCCGAAGACAATGCAGCCAATAGTTCCTCTGACAGCAGCCATGGAGAGGAGGACACAGGTGGCTCAGATGAAGGACAGGACTGGGAGCTGACTAAGCATGGAGTTGTCAGCCAGGTCACGCCTGACTCCTCTAAACGTCCTCGGAGACGCTGGTCTCATCGCATGGGCTCTCTGGAGCTGAAAGTGAAATCCATGCTGGACCTGAGACAGCTGGAGACCTTTGCTCCCAAGAAAAACCCCAGCTGCTCCCCTcatgacagagagagatggagcacgTCCAGCCTCCAGGAGCCCGTGTTGGAAGAGAGAGCCAAGAGGCACCGGCCCTGGCCACATGCTGACTGGCTGTCCTCCTCACACCCATCCAAGGGCATCATGGGGGCTGATGAAGCCGTGCTGTACCCCGAGGAGAACGAGATCGACGCAAGTCTGCAGGGGAGTGATTACACGGTGAAGGAGCAGCACTGCAGGATGCAAGGCCGAGGGATCCACAGTGAGAGCAAGAAAAGCCGCAGCCCAGACAGTGCCTGCTCTCTGGGCTACGACAGCAGGGACTCCAGCCCAGATCGGGTCCTGGATGATTCTGCAGATGTGGGGTCCCTGAGCCAGGACAGCTCTGATGAGGAGAACGAagagagggaagaagaggagcagaaggcAGAAGTGACGACTATAGACGAGGCTCTGAGGACAGTGACTGACACTGCTGACTGCAGTCAAGAAGATTTCCTCAAGCAGAACTTTGAGACGCTGgaagagagcagcagcagcatggAGCAGAGCCGAGTCCCTCGGCTCAGTATGTCTTCACGCTTCCTGGCCAGAGGACATAATAACAGGGGCATGCCTCTGTTTGCTAAAGTGCAGGGAAAGGAACACAGCAGCCACTCTGCTAAGCCCCCTGTGTCAAAAGTACGGCCCTTGATGGAAGATAGCCAGAGCAGAAACACGGAAGAGGGGCCACACGGGTTAGATGCTTCAGAGAGAGACGGCGCTCCTACCCTTCGACCcctgaagaagaggaggagttcAGGGTGCCACCTGTGGAGGTTGTCCAACCCTCCATCCAAAGCTCCGCTGCTGCTGGACCCACCAACATGTTTACAGAAATCACACTCTGCCCAGAACCTGGCCTCGGACTATCTTCACTCCCCTGTGCCCTCTAGTGACCAAAGCGAGTTCCGCATAAGACCTCAGCAGCTTTCCCTGAATCATGACACTCCACAGCCTTCCTTCCACTTTTCCTCACCCTCCTCTGGGTCCCCCCAGTCTCCCCAGTCCCCACTGTCCTGGGAGAGCCCCAAACTGAAGCCCCACCACTCCTACATGAACCCCACTGCCAGCTCCATGGCCAAAAGCAGCCGCTCCACCTCGCTGGGAGAGGTTATCCAGATGGATTATCCGCCACCTTGCTCCCCCACCTTCCCCAGGGACAGCAGGTCATGTGGGGAGCTGGAGATCGAACCTGCCCTTCTCACCCCGTCTCCTGTTGCTGCTTTCCCCTCTACTGTCTCATCGACATCGTCCCTCTTATCGTGTCCTCTGCCAAACAGTCCCTCCCCAGCTCCTCCCCATCCTATCGCTACGGTTTCACCCACTTCTTTTACCCAGAACATCCCGCCCTCTCGCATCCCGCTTCCCAAACAGCTTCTCAGCCCTCGCCGCAGTTTCTGTCTGGAGGGGATGTCAAGCTTAAGTTGTTCCGGAGACCCGGCGAGGGTTTCTAATTCTACCGTAGACCCTGGATGCGACATCACACCTACACCTGGAAACAGAGCACTGGGCAGGAAACTGTCTTTAAGTTTGGATCCTTCTTTGCCAAGTTCACTACCAGTGAGGCAGAAGAAAGACTCTGTTTCAGAGAGTGCCAAGGATCCATTACAGGTGGCTGTGGCCAAAGAGTGCCCTCGGGTGCCTGAACAGGCCCACGCATCGAGCGCTGATCCCCAGCCAGATCACTCCATCACCTTGGAAACTTGTAGGCAGGCTGTTACGGAGCTTCACAACAGTCTGAGGAAAACGGCCTCGCTGTACACTAtgGTGCTTCAACACGGCCAACAGCCCAGTGAAGATCAGCAAGAAATGAGGAGCATTCTGTCCGAGGCCCTGTTCACCGTCAAGGCTGAGCTGGACTCTCTGCCTCACCCCCCCTCACAGTGGGAAGGGCCCCGAGTGGACCATGGGGTCAAAGGTGAAGGAGAGAAGGCCCTGGCTCTGCTGGAGCAGTACGCTGAGCTGCTGCTTAAGTCTGTGGAGAGGAGACTAGACACCAAGACGTGAGGAAGGTAGACTGATGTTTGCCATCTGTTTGTACgaacagacacacgcacacacagtagCACTGTGAATCGCAACACTTGTTATTTGCACAGAGCTCTTTTGGAACTTTTTTTATGGCCTGAATGCAGATGAGGTGTTATTATATTTGGAGAAGCTGAaagaaatgaatgcagaaaaaaaaaaagtaaaaaaagttatagccttatttttcaagtttctttgttttctacTTTTTAAAGTCACATTTCATAAGTGTAATGAATCATAGTTGTTATGAAGGGAGACACCAGAAGGACAAAGATGATGAAGTTATATGAAGAGCACAGGTCGTTAGGCTCTgagattaaaatgtaaaatgtgtccTTAGGGAGGCATTAAAGCAAGGAACGCAATCCTTAAGCCCTACTGCTAATGGGGCTAAATTCTTTCTGTCAGGTACTATCTAGagatgtatacattttaaatatgttgAAGTGGGAGGTTAGAGGAAGTTCAGGATAGATTCCTTAATGTGTATCATAAAACATTCCTTCTGTATGTTTATgcaagtttttgttttatttttcttcaaacTGTTGCACTGTTCTTTCTGAGttctcttaaaaaataaaaaatgattgcATTGGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249475 lncRNA downstream 6703 14249214 ~ 14328936 (-) True G184224
XR_005636876.1 lncRNA downstream 92364 14238426 ~ 14243275 (-) True LOC120546499
TU249450 lncRNA downstream 103934 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA downstream 110420 14222975 ~ 14225219 (-) True G184217
TU249445 lncRNA downstream 193833 14119022 ~ 14141806 (-) True G184204
TU249559 lncRNA upstream 34057 14393447 ~ 14394111 (-) True G184286
TU249562 lncRNA upstream 49598 14408988 ~ 14409257 (-) True G184289
TU249563 lncRNA upstream 54866 14414256 ~ 14416171 (-) True G184290
TU249564 lncRNA upstream 57482 14416872 ~ 14417248 (-) True G184291
TU249565 lncRNA upstream 63763 14423153 ~ 14424847 (-) True G184292
XM_039782010.1 mRNA downstream 13498 14244441 ~ 14322141 (-) False pak5
XM_039782011.1 mRNA downstream 13498 14244441 ~ 14322141 (-) False pak5
XM_039782008.1 mRNA downstream 45241 14244441 ~ 14290398 (-) False pak5
XM_039782007.1 mRNA downstream 47671 14244441 ~ 14287968 (-) True pak5
XM_039782009.1 mRNA downstream 47673 14244441 ~ 14287966 (-) False pak5
XM_039782071.1 mRNA upstream 1123 14360513 ~ 14378555 (-) False magl
XM_039782070.1 mRNA upstream 1123 14360513 ~ 14378555 (-) True magl
XM_039781331.1 mRNA upstream 20624 14380014 ~ 14381177 (-) True LOC120546406
XM_039781332.1 mRNA upstream 28130 14387520 ~ 14388443 (-) True LOC120546407
XM_039782567.1 mRNA upstream 150058 14509448 ~ 14524171 (-) True lrfn5b
TU249319 other downstream 844511 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 867574 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 1119815 13206307 ~ 13215824 (-) False hmgn3
TU249578 other upstream 112811 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 212365 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1429524 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 2131260 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2470406 16829796 ~ 16835983 (-) False gpatch2

Expression Profile