Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039782524.1 |
| length | 1307 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 2 |
| gene id | nkx2.2b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053129.1 |
| NCBI id | CM020926.1 |
| chromosome length | 36987114 |
| location | 31866894 ~ 31869296 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0021514 | ventral spinal cord interneuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU255793 | lncRNA | upstream | 114688 | 31674705 ~ 31752206 (+) | True | G188757 |
| TU255807 | lncRNA | upstream | 145607 | 31720092 ~ 31721287 (+) | True | G188768 |
| TU255801 | lncRNA | upstream | 155923 | 31708879 ~ 31710971 (+) | True | G188763 |
| TU255799 | lncRNA | upstream | 163247 | 31703031 ~ 31703647 (+) | True | G188761 |
| TU255776 | lncRNA | upstream | 269179 | 31597215 ~ 31597715 (+) | True | G188749 |
| TU255856 | lncRNA | downstream | 49703 | 31918999 ~ 31927133 (+) | True | G188809 |
| TU255863 | lncRNA | downstream | 77902 | 31947198 ~ 31952652 (+) | True | G188816 |
| TU255866 | lncRNA | downstream | 99327 | 31968623 ~ 31968941 (+) | True | G188818 |
| TU255867 | lncRNA | downstream | 116016 | 31985312 ~ 31986086 (+) | True | G188819 |
| TU256051 | lncRNA | downstream | 273820 | 32143116 ~ 32143380 (+) | True | G188960 |
| XM_039780976.1 | mRNA | upstream | 84828 | 31776963 ~ 31782066 (+) | True | LOC120546196 |
| XM_039781689.1 | mRNA | upstream | 109976 | 31735570 ~ 31756918 (+) | True | cebpz |
| XM_039782544.1 | mRNA | upstream | 162531 | 31620408 ~ 31704363 (+) | True | LOC120547115 |
| XM_039782543.1 | mRNA | upstream | 162870 | 31620408 ~ 31704024 (+) | False | LOC120547115 |
| XM_039782030.1 | mRNA | upstream | 252372 | 31607288 ~ 31614522 (+) | True | LOC120546816 |
| XM_039782187.1 | mRNA | downstream | 12169 | 31881465 ~ 31884802 (+) | True | nkx2.4b |
| XM_039782188.1 | mRNA | downstream | 12169 | 31881465 ~ 31884802 (+) | False | nkx2.4b |
| XM_039782828.1 | mRNA | downstream | 224655 | 32093951 ~ 32105660 (+) | True | crnkl1 |
| XM_039782818.1 | mRNA | downstream | 242294 | 32111590 ~ 32145910 (+) | True | cd109 |
| XM_039782844.1 | mRNA | downstream | 666439 | 32535735 ~ 32569277 (+) | True | senp6a |
| TU255816 | other | upstream | 85856 | 31777029 ~ 31781038 (+) | False | LOC120546196 |
| TU255785 | other | upstream | 256793 | 31606054 ~ 31610101 (+) | False | LOC120546816 |
| XR_005637055.1 | other | upstream | 362666 | 31504009 ~ 31504228 (+) | True | LOC120547352 |
| XR_005637054.1 | other | upstream | 365840 | 31500835 ~ 31501054 (+) | True | LOC120547351 |
| XR_005637053.1 | other | upstream | 367566 | 31499109 ~ 31499328 (+) | True | LOC120547350 |
| TU256147 | other | downstream | 707182 | 32576478 ~ 32622264 (+) | False | myo6a |
| TU256417 | other | downstream | 1458807 | 33328103 ~ 33331713 (+) | False | pex7 |
| TU256470 | other | downstream | 1584700 | 33453996 ~ 33458768 (+) | True | G189269 |
| TU256525 | other | downstream | 1772324 | 33641620 ~ 33685556 (+) | True | G189309 |
| XR_005637066.1 | other | downstream | 1894169 | 33763465 ~ 33763626 (+) | True | LOC120547364 |
