RNA id: TU259794


Basic Information

Item Value
RNA id TU259794
length 220
lncRNA type intronic
GC content 0.48
exon number 2
gene id G191335
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2530824 ~ 2534932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacgcacacacacacacacacacacacacacacacagacacatacacatacacacacacacacacacacacacacacacatacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacagacacacacagatagacacacacacacacatacacacacccacacactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259789 lncRNA upstream 7476 2522703 ~ 2523348 (+) True G191333
TU259784 lncRNA upstream 16574 2512842 ~ 2514250 (+) True G191330
TU259781 lncRNA upstream 18066 2510351 ~ 2512758 (+) True G191329
TU259774 lncRNA upstream 30614 2496445 ~ 2500210 (+) True G191323
TU259754 lncRNA upstream 77261 2452507 ~ 2453563 (+) False G191310
TU259807 lncRNA downstream 41299 2576231 ~ 2577208 (+) True G191345
TU259802 lncRNA downstream 107088 2642020 ~ 2643454 (+) True G191340
TU260135 lncRNA downstream 163031 2697963 ~ 2700447 (+) True G191548
TU260147 lncRNA downstream 168266 2703198 ~ 2707931 (+) True G191555
TU260148 lncRNA downstream 181104 2716036 ~ 2723106 (+) True G191556
XM_039784446.1 mRNA upstream 22443 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 330367 2193300 ~ 2200457 (+) True LOC120548117
XM_039783720.1 mRNA upstream 418953 2006144 ~ 2111871 (+) False LOC120547899
XM_039784452.1 mRNA downstream 122925 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 294127 2829059 ~ 2829748 (+) True LOC120548310
XM_039784697.1 mRNA downstream 559035 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 588835 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 588835 3123767 ~ 3137751 (+) False znf365
TU259649 other upstream 214589 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 409359 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 412004 2118747 ~ 2118820 (+) True trnat-agu_14
TU259632 other upstream 426127 2047957 ~ 2104697 (+) True G191236
TU260161 other downstream 221222 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 227118 2762050 ~ 2766062 (+) True G191567
TU260196 other downstream 240376 2775308 ~ 2778367 (+) True G191573
TU260181 other downstream 288432 2823364 ~ 2921724 (+) False G191571
TU260292 other downstream 559052 3093984 ~ 3095422 (+) False LOC120548437

Expression Profile