RNA id: TU260149


Basic Information

Item Value
RNA id TU260149
length 6916
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G191556
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2716036 ~ 2725525 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgggactattggcgtcagtgctacgtcatcttcaaacgccatgtagctgctgctctccccggtgcgttctacacacacgctgaagggccCTTTTTCCGTTGTATCGGCACTGCCCAAACGTCCATATTTTACAAGTTCGGCatgagaacgggttgggttTTGGAGGATTTGTTGCTCCCTACCTGCTCGAAGCCTTCTTGTTATGCCCCTCCCACTCGTGTTTGCGGTGCAGGAAGCCCTCCAGCTGGGACGTGGGAGCGTCCTGCTGGGTCTTGGCCGGCAGGGTCGCCGCCTGGCTGACCTTGCCCTTGCGAGATGCCCCGGGAGACCCCGCGGGGCTGGGCTCCGACACCCCATTCACCACATCGCCCCCATCGACGTTATCCTggaaacagaagagagagagagagagagagagagagagagagagagaggcgagtCAGAGGAGGactgtggatggatggatctctctctcacacactttcttttttaaatctttctctctctctctctcagaacaCAGAAGCTGTAAATCAGAATTAGGCTATCAGAGCTGCAGcatgcagagcagagcagagcagaatCACAGGCTGTGTAGGCACTTACATTCTCTAAACTTAACCAAAACTGGAACCTGAATGAATAGATGTGTTCTGTATATTTCAGTTTGGTGTTTGCCTGCAACCTTTACGACTTTCATGAACACCTCTCTCCTGAATCTACTCAGGCGAAATAAACGATGCATAACCCTGGCAGGTTAACTTAATGCAACAAACATGTTTCAGAGGACACTAACTTCAATCTGAAACATTAAAATCTCTTGAGATTAAGACAGAGACCATGCAATCACATCAAAGtgcaaattaatttaaatacCATTACTATGGACAATTTCATATATCTTTCTAGACATGTTGAGTGTAATCTTTGTTGTTTAAGGGCCAAGGAACATCATGCAAATGTGTTCCTCTGATTTCACACTGCACAGCAAACCTCTGTGAACCAAACAACAAGAAATGCTACAACAATGAAGCCAAGAACACACAAAACTGAACACAAACATGCTACCAAATTACATTAAACTTATCTTAAGAAATAAGGTAACTCCACTAAACTAAAAAAACGTCATAACTACAAATCATAAGGATGTCCCAAGTCAGTCATGTTCCAAATCCTAAACAAAATGCCAGATTAAGCTTTAACATTTGTGGTCGGGACCCAACCCCATCCGGTCCCCCTTCAAGTTGCTGAGTTTGGAGtccaaaagatattcaatttactgtCATATAATGGCAAAGAAATTCAGCAAATCATCCAACTTAGAAGCTGGAACCataaagtgagagagagagagagaaaacgtatgtttctcttctgtttctgtttctctgaGTCAAGATTCTTCAAGAGGCAAGCCAACACTTGACAATCAAATAATATTTGTTAAATAATGCACCTTTGGGAATCCCCAAACCTAAAAGGAACAGGCAACAACAGGCAACACACgtcacacactcacagaagCTCCTCTGGTGTGGTCGCACCAGGCCAATCCCGCTATCAGAGCTGGCTGACATGTGTTGCCTGTCCCTCTTTGGGTTTGGGGATTCCAGTCTTTATGGTTTAAAGACCTAACTTCTAGATCTAAATCTTGAAATGTCAAAGTCAAGCTAAAAGTCTCGTTGGATTTCTAAAAATCGAGCCTGAAGTTAGCTAATTTGTCTCGTCTCTTACTGGAGTCTCTACTTCTGAACTAAACTCAAAACCAATGTGAGTTAATCTCAGACGCTCAACTGGAACTACTGTATACTATCGCCATCGAGCCTCTGACATCAGCTACTCCAGCCTCGTTTAAGCATCGTAAAGCATTTGTTTTTCAGCATTTAATTAATTGAGCTCAGCATTGGAATCCAGTActgattagaaaaaaaaaacatctgcgttgtacattaaagatgcagtaggtaagacttaaaaaactaactttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgacaatcctacctacagcacctttaagagcACATTGAGATGATTACAGGTTTTAGGACATGCATAAGAAATCACAACACCACTTaataacacaataacaacaTGGTAGACAGTGTGAAgaaagacagggagagggagaagctAGCAgatgggaaacacacacacaaatcaaacaATTATCAACAAAATTGCTTGGAATTCATTCCTGGGCATCATTATTGGTGAGGGGAAAATGCGATTGGCCTAGTATCataacagattttatttttttcacaccaCACCCACTCCAACCGGATGCTTATTACCCTGTTACTGAGCTCTTCAGGGGCTGGACCAATGGCGGACACTCTTTTTGAGCACAGTTCAGAGGCTGGACCAATCCTGGGAGCTTTATCTGAAGGGCGGCAAGAGCTGGGTCGATTCCTGGGAGCTTTTACTGGGAGCTTGGCGAAAAGCTAGACCGACTGGTGAGCGTTTATTGGGAGCCTTAGGGGCTCAACTAATCCCGAGAGCATTTAGTTTAATCTCGATAAGGGTTGGATGACATCGAAGAACTTTCCCTGACAGCTAAGCAAAGGTCGGACACAttcagaggtttttttttagttacatTTAGTCTAAAAAGTTAAACGTTGGACCAATCCTGGGAACTCACTTACATAAAGTTGGTCAAGAGCCGTGTTGGAAACTGTTCCCTATTACGGGAATATGgggaatatttatatttaacacgATTTGGCTTTAACAGATCAGTaactctatttaaaaaaaacttatatTGCTACCCCACAtccagaataaaaataaatggtaGTCCAACTAACCCTGTGGATGCCCCTTAAGCCCAGCTCTGTTCGCTCTTGTTATTGTGCCTCTCGCTCAGTTAATTAGAGAAGATGAAAAAGTAAGAGGTATTTCAATTAAAAAGACGGACCACGGATGACATACAAGATGCTTCCTTTACACAAATATCCGGTGCATCTTCTGACGCAATGATGGTTTGAAATTTTCAGTGTAGTGTCTAAAATCTGGTTTGGTCGTTGCCCACATAGTTCACCATTTAATAAACGTATAAAAAgaatgagggaacggtttccAACACAGCTAAGGTCTGGACCAGGTCTCGGAGCTGGAACTTCAAGCTTTATCAGGCATTCTTGACAACACAACAACCCGATAGTGTCATCCACAAACTTAAAGATGATACGGTAACCGTTAACCCATTTAATGCTGTGAATGTGAAATATGAACTTTAGCCACGTGAAGTTTTCAGTACTCTGTTAGCACAATTTCGCTAGCCTTAGATTGTTTTTTTCCCGTGAcgggtgcaagataggaccctAAACGTATGTATGTCTTAAAATGAAGCCCCAGGATTAAAACTGGTGGAGAACATGAGATGAAGACATGTTACATGGACAGAAAACTCAACTGAAATGCTCCCGATGGTGACAGCATGCAACAACAGAAACAACAACTGTACATGGAGAGAAGTGAcgaccacacacagacagacaaaccagAACGGCTCCGAGTGCTCTGATTGGTTCTGACAGGGTTTATTGGGGGAATGTGTGTTAGTCAGGGAACCAATGAATGGGCTGGATGGCCATGCGACAGAAACATGAAGAGAAATAAAAGAAGTTATAACAGTACACAATGGAAAACAGAGATCGATAATAATGATGAtacaaaaaaacagtgttgcACGCACGTAcgtacgcacacgcacacgcacacacacacacacacacacacacaagcctatATGTTGAAATGTTTACAAATGAATGGAAGATCTACTTTACATGAAACTGTGGAATGCATTTGAAGATGAATTCATATACAAATGGTCAGTTTTTACAATgacaacgcattctcatgaacggcttCGTATGACATCATACAaaaacttatgcacaacaattcgtaaCATACCCTATGAAATTTAGGCGACCGCCggccggtcacatgacagttaagtttaacaGTAGAGTACACTATACCCAGGTTTATTAGGCATCCACGGTGGGAAACGGCTTTTCGTGGGCCTTTTATTTGTCCGTGGCGAGCACGCCCATACCTTTTAGTTTAGAGTTTTACGGtagtttttttgtcaaatgtttATTGGCGGTAAACAGCCTCAACAAAAACGAAATCACTGCTACAGACATCAAGATAAAGAAGTATGGAGGTAAGTATTTCAGTGTTTGTCTTGAAAATATGTCACTTATCATACTGGGTGTTGCATGACTTGGAGCATTACATGTTTACTGTGTACATTTGACAAAAAGAGTTTGAACCCATCATCTGTGAAATGGCTTTCTAAGATGATGCACTCTGTCCTTAAACAAGACCTACAAACTGAATGTTTATACAGCATTACAGCTGCTTGCATTGCTGTGACTTAGCAGCAGAAAGTTTAAGGAGTAATATTGCTGACTGAgtggcatcaatgtattaatatatttaCATTACATGAGTGATATCGTTCCCACATTCAATTGTGAGACTGAATTTGAAACTTTAAATTGCCAGAAATTGAAGATGTGCAGATGTGCAGTGCATGCTTGGATAGCCTTGTTTGTCTGTCTTGGACAAAATATTActttaatatataaaaacattaaaaggatTTTGGAACTTAACTCTTTATGAGTCTGgcataaattacattttgaacaattcACGGACTGTCGATGCAACGTGTTAATGATCAAACTAAACCTACAGCAGCTtcaaatcttttattttaagacGATAAGAGTAAGACATAATTTATCTGAATATATTTCAGAGACTAAACTAcagttttacaatgttttttgtaatttggcgGGTAACACTGTGAAGCTACGAGCCAGTTTGGCCGGGGTACTTTAAGGTAcaatacattgtatacattaaAGTGTGAAGTGTAAATGTTGCTAgtggaaaatctgattggctggtaactttaaaaacctactagccatgttggctggtgatcaaaaaagttaatttaaagctGTGGATGCATGCAAGctttatatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgttttatatatttagcGTTATTACCACAATTTACTTTCTggagtaaatataatttaaataaatcctACAAAAGCCCTGAAAACTATGACGGGTCAACAGATTTTGTGAATCACCGTTTGAGGCTTAAAAAGCGGATTTTCGGAGCGAGGGCGGTGGACTGGTCAGGCGTTCATGTTCCAGAGGGTGAGTTTATAAATGACCACGTAAAGAAGCAGAAGCATTAACAGCTGAGGGGAGAGGACAGCGGGCGCGTCGAGCTGGGAGGgacagaagggagggagggaggaggaggggaaagaaaaacatgaaaggagggatggagagaaacGTGTGtcgtctgtttctgtgtgtgtgtgtgtgttttgtggtctTCCATTCTCCCGTCATGCAGTCACACTCATAccaaaaggaaatgcatatttTATCTTCTGCTAAATGTCCCAAGAATGCAAACATTTAAATTAGTGACATGACTTCCTGTTTACTTTTCTATTAGTACTGCTACTCCGTTTGGTTAAAAGAGTAAAAGAGCATTTTGTAGAACAAATATTACTTCTAGTGTGGTCCGTTTCTAATTTCTTTCATTGAACTAATTAAGTGCAAAAAGGAATGTTTGGTACGTTTAAGGGAAATGAGCAACAACTTGTATGTTTGCTTGAGAAATCTGAAATAAATGTTTCCCCGCAAAGGACAAAGGGTCCTACTTTAACGATCTAATCGCACGGTGTgtagcgcctggcgcaggtgtgtttagggcgagtccaaatccacttttgctagtttgacggcggtaaaaaagggtctgtgcgtccctgtgtgtgtaacaagcatagtgtgcgcgcgctgtgcacgagcctaggagcattttactaattccCACTGCCTCAGGAttgcaatacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagggGCCACAggtgggcgcaggtgcatttgctatttaaacgacgtgggcgctggacgggaaactgacaactgggtcggtcttaaaccaGCAAGACACTCGGGTCGGGCTTTGCGCCGCGCCGGGTGCGAGATAGGACCCTAAGTGTCAAATTAACAAACTGAGCAGGAACACTACAAAGATAAAAAGGCAACATCCACTTAACCTACTTTCAAACAGGAAATAATTCCTAACTCAGTTCCCTCCCAGTTCTTTCTGTCAGAAGTTTCTTCAGCTTTCCGCGTTATGaagcaaaaacagaataaagcCGAACAGGCCAGTGTGTAAAGTAATCAAACTCATGTCTCAAAACAAAGATACAAGTGTGCACGTGACAGCTTCAAACTTATTACacttataaaataataatcagGAAGGAGGAGAAGCAAACAATAAATGCTGGAGACAAATACAGGAATATGTATTAATGTGTGGATCCCAGGAGTGTCGAGATATTTCTGTAAGAGGTCAAAGCttaatgctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtcaggGTGCGGGGGCGGCCCTGCGGCTCAGCAGGGTGCTGCTGTATTGCTGGTAGGCAGGCGAGCGGTAACTAACCCTGGGGGACTCCTGATCGGACGGCAGCCCGTTCTGAGACACCGGCTCGCCCTCCCTGCAAAGAAACCACACGTACACAAAGagtcatacacactgctggataaaaacacacaacatacacaaagagtcatacacactgctggataaaaacacacaacatacacaaagagtcatacacactgctggataaaaacacacaacatacacaaagagtcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260147 lncRNA upstream 8105 2703198 ~ 2707931 (+) True G191555
TU260135 lncRNA upstream 15589 2697963 ~ 2700447 (+) True G191548
TU259802 lncRNA upstream 72582 2642020 ~ 2643454 (+) True G191340
TU259807 lncRNA upstream 138828 2576231 ~ 2577208 (+) True G191345
TU259798 lncRNA upstream 181760 2533816 ~ 2534276 (+) True G191336
TU260155 lncRNA downstream 12619 2738144 ~ 2740053 (+) True G191560
TU260183 lncRNA downstream 45108 2770633 ~ 2833233 (+) False G191571
TU260165 lncRNA downstream 92459 2817984 ~ 2835208 (+) True G191568
TU260175 lncRNA downstream 97772 2823297 ~ 2824381 (+) False G191571
TU260168 lncRNA downstream 98042 2823567 ~ 2824381 (+) False G191571
XM_039784452.1 mRNA upstream 52358 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 78760 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 207655 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 515579 2193300 ~ 2200457 (+) True LOC120548117
XM_039783721.1 mRNA upstream 604165 2006144 ~ 2111871 (+) False LOC120547899
XM_039784458.1 mRNA downstream 103534 2829059 ~ 2829748 (+) True LOC120548310
XM_039784697.1 mRNA downstream 368442 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 398242 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 398242 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 398242 3123767 ~ 3137751 (+) False znf365
TU259649 other upstream 399801 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 594571 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 597216 2118747 ~ 2118820 (+) True trnat-agu_14
TU259632 other upstream 611339 2047957 ~ 2104697 (+) True G191236
TU260161 other downstream 30629 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 36525 2762050 ~ 2766062 (+) True G191567
TU260196 other downstream 49783 2775308 ~ 2778367 (+) True G191573
TU260181 other downstream 97839 2823364 ~ 2921724 (+) False G191571
TU260292 other downstream 368459 3093984 ~ 3095422 (+) False LOC120548437

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU251683 True 2391 lncRNA 0.37 3 NC_035917.1 20025150 ~ 20027673 (+)