RNA id: TU260196


Basic Information

Item Value
RNA id TU260196
length 363
RNA type TUCP
GC content 0.55
exon number 3
gene id G191573
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2775308 ~ 2778367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGGAGATGAGTTTGCCCTCTCGGGGAGTGTAGACCTTCTGGTTGTTGGCTCTCATCTTGCTCTGGATGGTGAACAGAAGAACCTCCAGGTTCCCCTTCTCTGTGAacTTTGGCGGTTTCTCCACCGTGCGGTACGTGTTGAAggcctgcagctgctgctggacGCCCACCAGAGAGTTGGCGAACTTCCTGTTGTTGAGGATGATGATGGTCTGCTCGATCCACTCCAGCAGGTCCGACGCCAGAGACTCGTACTTCTCGATCATCTTCTCCGTCTCGATGGCGTTGTCCAGAACcTTTCCGATTCTCTTCCCCTCCACCTTCAGCGCCTTCATCTTGGAGAAGTAGTGGTAGTAGGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260155 lncRNA upstream 35255 2738144 ~ 2740053 (+) True G191560
TU260149 lncRNA upstream 49783 2716036 ~ 2725525 (+) False G191556
TU260148 lncRNA upstream 52202 2716036 ~ 2723106 (+) True G191556
TU260147 lncRNA upstream 67377 2703198 ~ 2707931 (+) True G191555
TU260135 lncRNA upstream 74861 2697963 ~ 2700447 (+) True G191548
TU260165 lncRNA downstream 39617 2817984 ~ 2835208 (+) True G191568
TU260175 lncRNA downstream 44930 2823297 ~ 2824381 (+) False G191571
TU260168 lncRNA downstream 45200 2823567 ~ 2824381 (+) False G191571
TU260173 lncRNA downstream 45200 2823567 ~ 2884123 (+) False G191571
TU260205 lncRNA downstream 47304 2825671 ~ 2894205 (+) True G191581
XM_039784452.1 mRNA upstream 111630 2657857 ~ 2663678 (+) True LOC120548306
XM_039784693.1 mRNA upstream 138032 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 266927 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 574851 2193300 ~ 2200457 (+) True LOC120548117
XM_039783721.1 mRNA upstream 663437 2006144 ~ 2111871 (+) False LOC120547899
XM_039784458.1 mRNA downstream 50692 2829059 ~ 2829748 (+) True LOC120548310
XM_039784697.1 mRNA downstream 315600 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 345400 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 345400 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 345400 3123767 ~ 3137751 (+) False znf365
TU260163 other upstream 9246 2762050 ~ 2766062 (+) True G191567
TU260161 other upstream 13629 2756154 ~ 2761679 (+) True G191565
TU259649 other upstream 459073 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 653843 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 656488 2118747 ~ 2118820 (+) True trnat-agu_14
TU260181 other downstream 44997 2823364 ~ 2921724 (+) False G191571
TU260292 other downstream 315617 3093984 ~ 3095422 (+) False LOC120548437
unassigned_transcript_1108 other downstream 371447 3149814 ~ 3149886 (+) True trnar-acg_20
unassigned_transcript_1109 other downstream 372106 3150473 ~ 3150544 (+) True trnah-gug_17
TU260665 other downstream 1493606 4271973 ~ 4282720 (+) False arfgef3

Expression Profile