RNA id: TU262096


Basic Information

Item Value
RNA id TU262096
length 2409
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G192997
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11135080 ~ 11139366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGTTTCATTTTACACCAATATGATGAATAGTCTCTAAACCCCGAGTCAACTCTGTTCCGgaaataaaaccaaacttatTTTGGGTGAGTTCAGCCTGCTGAGTGCTAACCTGGTACGGGAACGCATAAGCCATGATGAGCATTAATGCTTCCACAATCCAAATGACCCAATATGAACATGTGTTTAGCCACTTATCAATGTCCTTATCCCTAATCggatggagagacagacatCATGCAAAGAGGTATAGCAAATTGAATACTGTATTTGATTTAGAAATGTATGGTACATTAACATAATAACCACGCGAGAAAGAAACATTGAATGTAAGTAAGCGCTTTGAGCGACCCTGGGGCGGCAGAGAGGAGATGATGGGGGCAGCCTGTAGACTtgaataaatgtagaaataacaAGCAATTTCacttttcatatatttttttctttgcataaCTGTGACTGGTAACATATGTCATTATCAAACCCAcacctccccaaaaaaaaaaacaacaaaaacgccTAGAGCACTTCAGTTGTAAGTTTTGACAAATATTTTATGTAGGAACACCAAGTCAAGAAAAGTGAGGAAGGGATAGAAAAGAGGATGAGACGGGGGAGAGCAATAATTATGTACAAGCATATTTCTACACGTATATTACAGACCGGGAGAATGATCGCATTATTTGAGATATACATAATTCAATAtaaaattttgaaaataaaaataaaaatcttataCAGTCATGACGATTCCGttcgacattttttttttgaccaTGTACCCCACACAGGCAGTGACAGAAGTGTATTTAAAAAGGTGCTTACGACTTAAAATGATTGTCTGATGAACACAAAGTAAAAACAGGATTGCATCTTGTCTGCATGGCGGCTGCTTCGCCGTCattatcatcaccatcatcatcagcacaaaaaaaacggagatgaggaaaaaaaaaatagcgaCGAACACCAAGACGATCTGTTTTTATTCCCTCTGATCGATGTTCCTGATGGAAAATCTTGCATTCAGGTTATTCTCCctgattacaaaataaaaaataaaatgacatcatGCAAGTAGTTTAGTagtagtggtggtggtgtggggggtatgaagaggagggggaggcGTGGGTCCTTTGAAAGcgctttttaataaaaaaaaaaaaaaaaacgacgtgcttttatctctttttattttaatatttatatcaATCGGTCCTTTTTTCATCCGCGATATTTCataagtctttttttcttcctctcaggTCCATTTTCCCTGTAaatatttctctttttctttgtttatgtgtgtgtgttttttctccgTATCATACATCGCACTCCGAGTCGCTGGATGTGACGGACAGGATGGACGTCCCAGTATCAACTCTCTCTGTCATACTGGAAACGCTGGTGGTCGGACTGGCCGCGGTTGAAGGCGACTCTGCCGAGCTGTGAGGGGTGAGGCCGGCCTCTGACAGGGACCTCATACCGCTCGGTCCTATTGCTTGGTGTTGGAGCCTGGTTTTTTGCTGCCGCGGCTCTGTCTCGTTGCCTCCGGTTTTTAAACCAGTTTCCGACCTGTGTAGGAGTGAGTCCAGTGGCTTGAGCCAGTTCCCTTTTCTTGCTGGGGTTTGGATATGGGTCCTGAAGGTACCACTCCCTCAGCAGGCTCCGCGTCCGCTCTTTGAAACAGTGCGTCTTCTGCTCGCCGTCCCAGATGGTCCGAGGCAGCGGAAACTTCTTCCGCACCCGGTACTTATCGACCGGTCCGAGGGGACGACCGCGGAGCTTCTCGGCCTCCTGATAGTGCGCTTCCAGCCACATGGCCTGCAGTTTGCCGTGCGAGTCCTTGGTGAACTTGTGGTTCTCCAGGATGTGGTACAGGTCTCTGAAATTCCCCGTGTGGAACGCCACCACGGCCCGGGCGCGCAGGATGGACTCATGCTTGTTGATCGCCTCGCACGCTCCCGGAGCCACAGGCAGGGACCAGAGGAAGCGGCCCAGCCGTTCGATGTCCCCGGTCTCCTCCAGCGTCTCACAGACGCTCGCCACCTGCTCCGGGGAAAAGTTGAGGGTCGGTAGCTGAAACATGGACAAGTCTTCTGGAGACCTGGTGGTGGGAGCGCTGTTCGCCAGGAGCACAGGGCGATCAGCGAAGTTTGGCAGGAAGAAATGGGAGGGATAAAGCTCTAAAGGGGATCTGAAAACCATGGAAATGacctgagagagaaagaaatttatcaagaaaaaggaaaaaccgaAAAAATACGGCCAGTAAAAAAGATTGAATGATTCAATGGCTATCGCCTAATGACACCAGCCTCATAATATCTCCCCCCTAAATCCGCCGTTGAGTGTAGCATTGAAACATTTTGTTTCCCTTTTCTATTGGTCTTCTTGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262039 lncRNA upstream 116149 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA upstream 116180 11018140 ~ 11018900 (+) False G192945
TU262032 lncRNA upstream 138435 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA upstream 172231 10959214 ~ 10962849 (+) True G192942
TU261981 lncRNA upstream 367026 10767031 ~ 10768054 (+) True G192900
TU262094 lncRNA downstream 7438 11146804 ~ 11150208 (+) True G192995
TU262150 lncRNA downstream 243727 11383093 ~ 11386325 (+) True G193041
TU262157 lncRNA downstream 254728 11394094 ~ 11419102 (+) True G193047
TU262190 lncRNA downstream 443427 11582793 ~ 11583789 (+) False rtkn2a
TU262300 lncRNA downstream 575850 11715216 ~ 11715850 (+) True G193161
XM_039783020.1 mRNA upstream 20275 11111368 ~ 11114805 (+) True six2a
XM_039784507.1 mRNA upstream 117063 10965298 ~ 11018017 (+) True srbd1
XM_039784158.1 mRNA upstream 178458 10953053 ~ 10956622 (+) True LOC120548129
XM_039784149.1 mRNA upstream 262640 10861935 ~ 10872440 (+) True LOC120548125
XM_039784150.1 mRNA upstream 262640 10861935 ~ 10872440 (+) False LOC120548125
XM_039784261.1 mRNA downstream 217674 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA downstream 217674 11357040 ~ 11367727 (+) False prepl
XM_039784690.1 mRNA downstream 291932 11431298 ~ 11433996 (+) True znhit2
XM_039783267.1 mRNA downstream 295234 11434600 ~ 11492318 (+) True lrpprc
XM_039783269.1 mRNA downstream 368729 11508095 ~ 11518919 (+) True abcg5
TU262031 other upstream 178502 10953139 ~ 10956578 (+) False LOC120548129
TU261925 other upstream 543921 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 546029 10586778 ~ 10589051 (+) False mrpl57
TU262093 other downstream 10953 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 217674 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 226022 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 578527 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 1107585 12246951 ~ 12278375 (+) True oprm1

Expression Profile