RNA id: XM_039784035.1


Basic Information

Item Value
RNA id XM_039784035.1
length 5572
RNA type mRNA
GC content 0.47
exon number 3
gene id zbtb18
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11856987 ~ 11891203 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCTCGCTCTCCGCTGCGCCAGTCGTCCTCAGACTCGCAGAACCAGTTGGTTTGGCCCAGCTTCTTTTTCCCTGccttctcactgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgctgctgctgttattGCCTGGTGTCAACCTACGCCGACGAGAGAAGACatatccctccctctcctctgttAGAGGGCCGCTTCCAATTTGCCTTCACTTTCCTCCTCGCCGGCACCATTGGCTTCCGTGCCGTGCCAGTCAACTCGCCTCCTTTTCCCAGCCCGAGTTGAGCAGCAACAGCTCGGAAACATCTGGCCGCCGCAGAGTGCTAGACTCCCGTCCCTCCGCCTGCTCGCCTCGGCAGCCTGTAATGGAAATTAGTCCAAAGTCAATCTAGTTTGTCTCCGAAGGAAAAAAACGGAGGATTTGACGGAGGAAGCGGGGAAGACGTTGGACCGTGTTGTCTAGCGAGCgaggaagagaaagagcaagaaagaaagagagagagatacacagCCATTCCCAGCCAGAGAGCCCAGCTATTCTGCTACAGTGGAGTTAATCAAGTTGATGCATACTGCTGCAGGTTATGAGGACGGCAAGATGGAGTTCCCAGACCACAGCAGACATTTACTCCAGTGTCTGAGCGAACAGCGGCACCAGGGCTTCCTGTGTGACTCCACGGTGCTGGTGGGCGATGCCCAGTTCCGGGCCCACCGAGCTGTGTTGGCCTCCTGCAGCATGTACTTTCACCTCTTCTACAAGGACCAGCTGGACAAGAGGGACGTGGTGCACCTCAACAACGACATTGTCACAGCACCGGCCTTTTCCCTGCTCCTGGAGTTCATGTATGAGGGCAAGCTGCAGTTCCAGGACCTTCCCGTAGAGGATGTGCTGGCAGCGGCCAGCTACTTGCACATGTATGACATCGTCAAGGTGTGTAAGAAACGTTTGAAGCAGAAGTCCACGACGGAGGCAGACAGCACGCGCCGAGAAGAGGATGGTGGGTCCAGCTGCTCCGATAAGGCCGACAGTCTATCAGATGGCTCTATAGGCCGGCCTGCTACTGCCGACCTGCTGCAcagtgatgaagaggaggaggggaaggtCGAAGGAGGACCGCTGTGGCTGAGGCTGCCGTCTGCAGACAGACCAAGGACACCAGCCGTGGCTACAACCAGCCCAGGGCATGGCGAGGCGGAGATGCAGGGTGGGGATGGGCTGGGGGAGGGAGGAAAGCTGCTCTCCCCGGCCGGCAGCCCCACCAGCTCCACTGGATCCCTCTCACAGAGGTCCCACCGCTCCGTGAGCTCTCGTGGAGCGCACAGGGGCAGGAGGGTGTCGAATGATGCGGCTGACTGCGTCCTGGACCTGTCAGTCAAGCCAATTGCAGGCAGCAACCACAATAACCACCACCAGTCCTATTTCAGCGGGGCAGCTACACCAGACAGCCTCCAGAGCCCATTGGCTGTGAGGGTGAAGGTGGAGAGGGGTGTGGCTTCCGACGAGGAAGAGGATCTGGGAGGTGGCGACTATGACATGGAACACAGCGGCATCACCAAGGCGACGGCTCCCACCACCAACGGGGGCCTGGCCCACCACGGGGTCGGAGGGCCTCTGTCGGCCCAGCGGAGGCTCGGCCTGGAAGCTCACCTGTCCGCTCTGCGAGAGGCCTCTCTGGCCTCGGAGCTGGAGCGGGAGGAGAAGAGTTCAGCCACCGCAGACGACGAGGACATACTAGGGGGTGAACACGAGCGCGCCCAGGCCGAGGTGAACAGCATGGATAGTTCCTTGCTGCCCTACGTCTCCAACATGCTGTCAGCTCAACACACCCAGATCTTCATGTGCCCGCTGTGTAACAAGGTATTCCCCTCCCCGCACATCCTCCAGCTTCACCTCAGCTCCCACTTCCGGGAGCAGGAGGGCATCCGCTCCAAGCCCGCTGGAGACGTCAACGTGCCCACCTGCACCATCTGCAGCAAGACCTTCTCCTGCATGTACACGCTGAAGCGCCACGAGCGGACACACTCCGGTGAGAAACCCTACACCTGCACCACCTGCGGCAAGAGCTTCCAATACTCACACAACCTCAGCCGCCACGCAGTGGTGCACACGCGCGAGAAGCCGCACGCTTGCAAGTGGTGCGAACGGCGCTTCACGCAGTCCGGGGACCTCTACCGACACATCCGCAAGTTCCATTGCGAACTTGTCAACTCGCTGTCAGTGAAGAGCGAGCCACTGGCACTGCCCAATGTCAGGGATTGGGCGATTGAGGACAGCTCCCAGGAACTGTGGAAGTAGAAACAGACTGGGTTTGACAAAGGGAAAGAGAgcagagagtgaaagagaggcaAGGGGGAGGTGAAAGGGAGGTGGCAAAGTTTGATATTTGGGGTTCAAGTGAGTCATGTTCTTGTATGTCGCAAAAATCTCATTCAATTGCACTTTAATAGCACATGAAAATGTTACtactgagttttttttgttttgttgttgttgctgtttggggtaattttgttttattctattttattctgAACTCTCATTTCTATTTTTGGCATAAGTTCTGTTTGGTGGTTTTCATTGCGTCTAAGGACATGGGTCCCAGTGAGAATGTCTCACCTTCTTGAAGAGTTTTCACTCTGTTTGTGTTTCATCTCAGACACAACACTCCGACGCTGGCCAGCGTATCGGTCCCAGTTCCACAGACAGCAAACACCACTGCAGGAGTTCAGGTCGAACACACTGAAGTGCAAAAGCATTACAATACACTAAACGGGTACTGTGatcaccacacatacacagtttgaagtagtgtgtgcgtgtgtgtgtgtgtgtgatactgcACTACTCTGGCAAAAATTTCACCTGACGTGCGtgagtgtgtatgagtgtgttttgtgtgtattcattttattttctactgGCATGGAGGTGTCGTTGGCGAAGCGCTCCCCGCTTCTCTCGTTAAGCTCTTTGGTGTTGTGTGTTCAGGGTAaagctgactgactgacagactaACTTATGGCACTCATGCAATGcacagcctcttttttttttcacttccaaTCAATTTGAAGTattttctaaaaatgaaaagacctttacaaattattatcattattattattattattattattattgttattaatagattttttttaaaatctagCTGGCAGTCTTTAAAACATCTCTTGTTgaaaagatatttaatttaagGTTGTTGTATATTGTTCTGCTATAGTTTTAGAACTTAAATCcgttacattattttttttttttttaaattaatgattattattattttgttactttttttgtaATGGGACCTGCTGTTGTTGCATGACGTCCAAAcctgtatattttaaaataaaaatgtgaatttGCTGTATTACTGTACACATTGTAATTGATCAAATATTTGACAACaggctttctttttcttttctttgtgaatACTACTCCAGGGTGCGGTCTGtttgaaaaactgaatattaTTCTCACAGTATGGAAATAATGCATGAAAATTTGATTTTGTCTTAAACCTTTAAGTTGTGGTTATTGCATCGCAGGGGGGGAgatgtttgaacacttttgacAGTGAAAAGTTGGATTTTTTTCTATATGTCGTAGGTCTGTCGCTGGGCTCCTAGAAGAATGTTACCGAATGTGTTTCCGTCGGATGTTGAAGCGATATGATGAAGCATTTTAAGCCTCTGTGTATATGCACTGATCTCtctgctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtttgtgcctgtggCTTGGTTATTACCAGTCAATTTAACCTACTGAAGATCTACGTCCACCCAGCacttcctcctgctcctcctcaggCGTTCAATTTCTCTACTGCTGTATGTCCGTTTTCCACCTCCCAatgtctctgtcctctccagCTCTAGATGTGGTAAAGCcatttttttacaattatttcTGCTCATTGGGCACTTACTTCAGGTCTGTTGAGTGCAGTAATGTGGCTCTGGCTTGTCTAAAGTGAGAAGAATaacggggagagagagagagagaaaacaaataagGAGAGCGGCCGTAACTGAGCTGTCCTGCTGAAAGTTGAAGGGTCAGATATCTTTGTCACGAGCTGTGCTGAGCTGAGCGGGGCCGTGCTGATTCAATACAATAACCCACATTAGATGCAGTGGCGTGAATGTGATaaggagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgttttcTTCTTAAAACATAATCCTTACTTTGAGATCGATGGGAGCGAATTGGCATGCCTGAATGCACCTTTTTAAGCTAAAAGACatgaaatcagattttttgCTGAAAAGAtgcctttatttaaaaaaaaaaaaaaaacacatttctgacGCTATGGAAGTATTTGATACTGTAAAGCATTGTGAAATAGTTGTTAAAATGATGTATAAATTCATGGAATTTGATTGAATTTATCAGAAAATCCTTTTTTGTATGTGAATGTTGTATTTGGACTGGGGGCTACATcagtttaataataattttcaggggtgtttttttttaacctctgtATCAAATTTTTTTGGTTGGAATTTCACAATAACAGTCAAGCGTTCATACAATCCGAATGCGTTTGACACAGAGATACTAATAAATTGAACGCTCCACATTTCCCCCCTCACtcagatgtgtatgtgtgtatatgtctgcgTGCACGCCCCCATTGATGTGCATGTGGTGGGTGGGGTGGTTGTATGTGTTGCCCTGTCATCTGGTGGCACCTACAGGCTTTGCCAAGGCAACAGTGTGGGTGACATTGCAGCAGTTTGCACCGCATCGTCTAATTTCTTTCTTCTCGGAACGCTATTTCTTTACTGGCAGTGTCTCTGCATATGGGGCTCACTCCATCCTGCTGTTGTTTTCATCActactgctgtttttttttgttgttgttctgttcCTCTGGTTGTACTTGACCGCCTTAAACTGCTGTAGTCTGGGctgtttttttggttgttttttttaaaagtgtgagCGTGGGGTGGAGTTGTGGGAGGGATGTCAACCGCTCAAGACGCTGTGAAGTAACCACCCTGACGAAACATCTCCATCTTTTGCTGTGCTTACTTGAAAACAAAGgggggagatttttttttttttaaagcaaggtataaaaatgaaatgttctGTTTATGGAAAGGCagattgggggtgggggtgtgaagTGACTGAGTCTGTTGTGAAAAAGGACAATCACtatctgggggaaaaaaaagaaaggaaaggaagattTTGATTCAGATATATTTGCTCCCTCTTGAGATTAAACgttttctttgcttttcttttatgtTCCTTTTTCAGATTTAGTCATTTTTAGCTTTGACAATCATAGTTGGGTTGATTTCTTTTCTCTCAAGGGGAGTAAATTCTAATTGTGTTTAGTTTTGTAATTTTTTGGTGTGCTgttgttgacatttttaaattgtgTGCAAACTGCAATAAATTATAAGAATCTTGAAATTCAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262324 lncRNA upstream 65030 11786413 ~ 11791957 (+) True G193172
TU262300 lncRNA upstream 141137 11715216 ~ 11715850 (+) True G193161
TU262190 lncRNA upstream 273198 11582793 ~ 11583789 (+) False rtkn2a
TU262157 lncRNA upstream 437885 11394094 ~ 11419102 (+) True G193047
TU262150 lncRNA upstream 470662 11383093 ~ 11386325 (+) True G193041
TU262376 lncRNA downstream 119588 11987274 ~ 11991708 (+) False G193213
TU262377 lncRNA downstream 119588 11987274 ~ 11991708 (+) False G193213
TU262378 lncRNA downstream 119588 11987274 ~ 11991708 (+) False G193213
TU262379 lncRNA downstream 119588 11987274 ~ 11990215 (+) True G193213
TU262381 lncRNA downstream 119588 11987274 ~ 11990215 (+) False G193213
XM_039784367.1 mRNA upstream 66448 11717895 ~ 11790539 (+) False sdccag8
XM_039784366.1 mRNA upstream 104171 11717895 ~ 11752816 (+) False sdccag8
XM_039784365.1 mRNA upstream 106530 11717893 ~ 11750457 (+) True sdccag8
XM_039784370.1 mRNA upstream 132158 11717893 ~ 11724829 (+) False sdccag8
XM_039784364.1 mRNA upstream 146581 11697606 ~ 11710406 (+) True tnfaip3
XM_039782941.1 mRNA downstream 56408 11924094 ~ 11927433 (+) True LOC120547506
XM_039784051.1 mRNA downstream 68639 11936325 ~ 11985948 (+) False LOC120548087
XM_039784048.1 mRNA downstream 88344 11956030 ~ 11985948 (+) False LOC120548087
XM_039784047.1 mRNA downstream 99956 11967642 ~ 11985948 (+) True LOC120548087
XM_039784049.1 mRNA downstream 100037 11967723 ~ 11985948 (+) False LOC120548087
XR_005637161.1 other upstream 110285 11717893 ~ 11746702 (+) False sdccag8
TU262145 other upstream 488364 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 491383 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 704746 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 900409 10953139 ~ 10956578 (+) False LOC120548129
XR_005637197.1 other downstream 379265 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 379265 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 419360 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 419360 12287046 ~ 12290232 (+) False sf3b5
TU262526 other downstream 419360 12287046 ~ 12290232 (+) False sf3b5

Expression Profile