RNA id: TU262619


Basic Information

Item Value
RNA id TU262619
length 3686
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G193395
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12857800 ~ 12932854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTTCTCTTTCATTTTGAACTGAGGTCCGCAgctttatgtttgtgtgtaagcaTTGGCGAGGGTCTATGATCCAGGACAATGAATAGCATTGACTTTCAAAGTAGTACCTACCACCATAGGACCAGGGATTTCACCTGTGGCCTCTCATTGATAGCCCAGCCCCATCTTCTGCTCGGAAGTTTAACATTTTTCCATTGACCtacacttaaagctatagtgcgtagtttcggTCTCCCCCATGAgtaattctaagtaatgacaacaacactgtcggcacgtccacatgatacagccttctgtgatcgtgcatgcgccccccacccctcctccacgcagttgctagtatgcaaggaggacacagaggattaaaaaagcatgatggactcttcagaagaggtcattatcttcactggaGCTTCTGCAGGGGAAAGTCatcggacgacacaatcttctgaacatagccatactgagaaatacacagagagttggagctgatagtcttaattagctttgtagcaacttatttggcaatggcttgaatgtaacggacgttcattaatatcaatatgttacgcactaaagctttaagcatTCAGTGTAAACATGTCTGGAGGTTACTGGTCTAACATGTAAGCAATTGTGATGGAAACAACATATTAAAGAAACATGGTAAAAGGTGACAAAGTTCCATTTGCTTCAGTACTAACAGATGATTAGCTGAAACACCCTTATCAGATTTTTTGGTTCAACCTTTATTGCTGTCTCACATGGCTTCCTAGAAAAATACGATTACATTTGCAAAGTGAGAAACGCtgggaaaaaataaagaatataatAAATCAAAAGGTACTATGAAACCAAGTAGTTTCTAAATCCAGTTTAATGTTCATTCAGCATCAACAACTAATGTCATTTAAAGTGCTCGGATCAGAATTTTCAAAAAGCTTAATTTGCTTTTCTTTCATTTGCATAAAAGGTAGCTAAATACATAGTGTAGCGTTCCCTCATGTTTTTGCTTCAAACAATATTGCACAGTATACTGGAGCTAGTGCTCAACATCTGAAAGCAGCTGATACTGGAGATTACGAAGTGATAAATACAGTGACCTTGCATATTATGGGAAGAAAATATGAACAGCTACACTACGGTATGTGTGCTTTATCTGCACACTTTTAAATTTAGCTATGCTGAAAATTACAAATGTAACACTTGAGTGGCGGAGTTTAACATACTGTAAAAGGACATCAATGGGCTGTACCGTGTCTGTCGCTGCTTGGACAACAAATATACTAAACCACAAGTCAAAAAACTTAGACTTAAATATTTAGTAGAGTTATCTCAAAAATAGAGAAAGGCATGTTTGCAAGTTTAAGCTTTACTTTAAAACCACCATCAGGAGCAGATAGAGGTGGCTAGGAAACAACTGCTCCTTCTGGTGGTTTTAAACCAGCATTAACTGATTTCTTTTCACCACTTGGAAGCAGCTAATGGCAaatgtgttagcaaacagtaGCTACAGTTTTTACTAATTCAGTAGATAtgtagcattcatttggagtcattaTACACATTGATGTGAGTGAACCAAAACCGTAAAGTCGTGAGCTGTAAAAATATCAACAAGCTAAAAGGTCGTAAAACGCTCCGaggagctgaggggaactgctgAGTTACAGTAGGTGAGGATtatctgtgggtttgtcactgttagtgttttgttttttgcggTAACTCTACTATGTTGTAAATATTAGTAGACTTCCTGGTTACAAGTCAAGTAATGTGTCAGTTTGGTGTGCATCTTCATCGTATTGCACAAAAACATCTTTAGAGATAGATGATTGCTGACATGTAGTCCTGTGCCATTcagagtaataataataacaacctGGCCCCTTTTCCTGTTGTGCAATGCGGCCTAATAATTTGTGAGTCTTATGGAGACAAAAAGTGAATCAAGATCCTGCATTAGAATTGATCCGAGTTGCTACAGAGAACCCAGTTGTGGTTTTGTTATAGCATAGCTAGCAAGACTGATTGGCTTGACTGCTAAACTAAGCAGGGATATTGATTTGGAGATAGGGAAtacagcacagggagagaaggaTGTCACTGCCCTGGCATGGGTTTGCCTTtggctcactcactcactcactcactcactcactcactcactcctcactcactcactcactcactcactcacagacacacacacacacacaaagagaaacacTGGCAGCCAGAGGTGTCTGGAgatgcacaaatacacacacacaggcacacaaacacatacagcagGCAACATTGATTTCCTGTTTGGGATTACTAAGCAGTGAGTGGCACAGCTGAGGCTATTCTCTGGACCACagtgcacacaaacagacatgctATGTATTTTgtgtccctctcctctcttatATACACCTTCACAAGATTTTATGACAAACATTCACAAGCAGAAAGGTTTTCTCCTGATCATAGCACCTTCACTATTTCATCTCTACATCTATTATTCTTTGCCTTAAACTCCTCTTTCTTATCCTGTGTGTgcatctttctgtctctgttttcattaaaataaatgggtTTTTCTTGGCTTCCCATAGCAGTGTTGACTGCTTGGCTGGTTTGGCACAATGCTGAACCATCCAACAGGTAAACATTTGTTATCAGCCACATGGATCCACATTTCCAGCCTCTACCCATTTCCAGGGTAATCTAGGGACCACCTTTTCTTGTCTACACTGGACAGATGGATTAATGTGTATTTGGAAGCTCATTTTGTGAGAGCtgccaaaacaacacaaacactctTGTAAGCACTTTGCTGTAGaattcaaagtgtgtatgtagACACACTTGTTTGGCTACTGGGAAGTGTaaactgatgtgtgtgtgtgttccctttGCATTTCGTGTCTCTTTCAGTTTTGTCAGAGCTCCTGTGCATGTAACTTGTAACTTGTGTccggatgtgtatgtgtgtgatgtgtctatgtgtatctatctctctctgtctcactctgtcTATGTAGGGTGCATTATTGGACGCAGTAGACCGGACAGTGCCAGAGGCATACACCAAGCGGTCACGCGGCGTGACAGAGAAGAGAGCAGAGTTGCTGTCAGAAGGCCTTTTTAACACACTGCTGCTCTCCGTTTGGGGACATTTCGGAAGCATTTGACTGCAAAAGGGCTCCGCAAAGGAGAGATAAACACAATTCTGAAAAACTCCCACAGAAACACCACTAAAGCCCCAAAGGCTCCCTACCTGAAAATACCACACTAATACCTTTGATGTTCCCAAAGTGATGTGCAAGAGagcgagaggaggagagagacggGGAAAAACGACAACAgctcagactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtgtgagTGCTTTATTACACTGCTCTTTTCCGCTACGGTATAAAACCTAATTCCTCACTTGCACACTGTTTCTCTAAATAATATCTCCACCACCAGCATGGTATTATTTTTATAAGACTATAATTACATCTGAGTTGCATTTACACAGAAGGTCTGAGACCCCTTTTGCTAATATGTGCTGGTTCAAAGGTTCACCCAGGATGTAACTAAAAACATGTATGCacttccccccacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262616 lncRNA upstream 13420 12844072 ~ 12844380 (+) True G193393
TU262615 lncRNA upstream 90326 12767268 ~ 12767474 (+) True G193392
TU262594 lncRNA upstream 391987 12465597 ~ 12465813 (+) True G193373
TU262490 lncRNA upstream 676847 12178791 ~ 12180953 (+) True G193296
TU262489 lncRNA upstream 679323 12177585 ~ 12178477 (+) True G193295
TU262752 lncRNA downstream 236935 13123018 ~ 13205499 (+) False chrm3a
TU262975 lncRNA downstream 866660 13752743 ~ 13754740 (+) True G193661
TU262976 lncRNA downstream 867470 13753553 ~ 13754796 (+) False G193661
TU263017 lncRNA downstream 1059990 13946073 ~ 13946351 (+) True G193701
TU263025 lncRNA downstream 1085707 13971790 ~ 13972115 (+) True G193709
XM_039784461.1 mRNA upstream 95995 12499528 ~ 12761805 (+) True grid1a
XM_039784462.1 mRNA upstream 95995 12499530 ~ 12761805 (+) False grid1a
XM_039784464.1 mRNA upstream 96656 12499527 ~ 12761144 (+) False grid1a
XM_039784729.1 mRNA upstream 432636 12405925 ~ 12425164 (+) True wapla
XM_039784905.1 mRNA upstream 455204 12376522 ~ 12402596 (+) True LOC120548561
XM_039783667.1 mRNA downstream 37858 12923941 ~ 12931164 (+) True LOC120547885
XM_039783018.1 mRNA downstream 49269 12935352 ~ 12944733 (+) True ndnfl
XM_039782952.1 mRNA downstream 59599 12945682 ~ 12948629 (+) True dnajc9
XM_039784165.1 mRNA downstream 76974 12963057 ~ 12971062 (+) False ecd
XM_039784163.1 mRNA downstream 77064 12963147 ~ 12971062 (+) True ecd
XR_005637191.1 other upstream 486530 12351324 ~ 12371270 (+) False LOC120548560
XR_005637192.1 other upstream 486530 12351325 ~ 12371270 (+) False LOC120548560
XR_005637194.1 other upstream 486530 12351325 ~ 12371270 (+) False LOC120548560
XR_005637193.1 other upstream 486530 12351325 ~ 12371270 (+) False LOC120548560
TU262526 other upstream 567568 12287046 ~ 12290232 (+) False sf3b5
TU263049 other downstream 1188559 14074642 ~ 14076457 (+) True G193730
TU263682 other downstream 3467108 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 4003317 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 5682900 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 5794906 18680989 ~ 18682296 (+) False prdm8

Expression Profile