RNA id: XM_039783020.1


Basic Information

Item Value
RNA id XM_039783020.1
length 1900
RNA type mRNA
GC content 0.49
exon number 2
gene id six2a
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11111368 ~ 11114805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAAAGCATATCAGGTTACCTTGAGTGACAGCGTAACCATGGCAAATAATTTGACTAAGGCTATTGTCTTATCCTCACCATCCCCAGGTCAAataaccaaccaatcagagttcATATAATCGCTTGTCTTGCCAGCTtagaataatattattaaaacgAGCCAGCGAGCCCGGTCTCCGGGAGTAGGTTATGTTGAAACGGCATAGAAAAGGTGGAGGAGGACGGTTGAAGGAGTAGcaactttctctctttctcaccaACTATATGAGGGATTGTCGCCTGGGGTTTTGCATGGCTGAATGGACTTGAGTTAATACGCAGTTGGATATTACCTAACCTTGGGCTGTTTTAAGTTTTAGGCTGCTCTTTTGGGGACCTTTTGTCGCTTATGGACTTAATGCGTTTTGATTTAATGTGAGACTGAGAGGGGAGACGTGGAAGTAAGGCACAATATAATCTGTATTGATTTACGTTGTCGCCATGTCCATGCTTCCGACGTTTGGTTTTACGCAGGAACAAGTTGCGTGTGTTTGCGAAGTACTCCAACAAGGGGGGAACATCGAGCGGCTGGGGCGCTTCCTCTGGTCGCTCCCGGCGTGCGAACACCTCCACAAAAATGAGAGCGTCCTCAAAGCGAAAGCCGTGGTCGCTTTCCACCGGGGGAACTTCCGAGAGCTCTACAAGATCCTGGAGAGCCACCAGTTTTCGCCGCACAACCACCCGAAGCTGCAGCAGCTGTGGCTCAAAGCGCACTACATCGAGGCGGAGAAGCTGAGAGGCCGCCCGCTCGGCGCCGTGGGGAAGTACCGCGTCCGGAGAAAGTTCCCCCTGCCTCGCTCCATCTGGGACGGAGAAGAGACAAGCTATTGCTTCAAGGAAAAGAGCAGGAGCGTCCTCCGAGAGTGGTACACCCACAATCCTTACCCATCCCCGCGGGAGAAAAGAGAGCTGGCCGAGGCCACGGGACTCACGACCACGCAGGTCAGCAACTGGTTCAAAAACCGACGGCAGCGAGACCGCGCAGCGGAGGCGAAGGAAAGAGAAAACAACGAGAACTCCAACAGCAATAGTCACAACCCATTGACTTCTTCCATGAATGGAAATAAATCTCTATTGGGGAGCTCGGACGACGATAAAACACCCTCGGGGACACCGGATCACACGTCTCAGAGCCCGGCTCTGCTCCTCGGCTCACACACCGGTTTACAGTCCCTGCACGGCCTCGCGCCCCCGCCAGGACCCAGCGCCATCCCGGTACCCAGCGGTGCAGACTCGGTGCACCATCACCACTCATTGCACCACGACACCATACTGAACCCTATGTCTTCTAATCTAGTGGACCTTGGCTCTTAAAAAAGCGGCACAGaagaaggacagagagcagccgtcttttttttttaaagaaatttacGAGGTGGCGTGAGTCAAGCTTCAAGCACTTGCGGCAAGGTGCAAGGCAGAAAGACTGGACTGGAACACTGCGAAATCAGCCACCATAACAAATCATTTAGTCTCATACTCAACGTTTAAAGTCTTTTTAAACAAGTGGGAGAAATCTGCCAGTGGGCGAACTTATGCACAATTACACTTATAAACCGCTTGTTTCGGGGATTTTCTAGTTACAAGTGTCAAGGCAGAGCACTTAAGAACATTTGGAAATATAGCCTACTTAAAACAGGTACCATCTATTGGCATATTTTCTCTTTAATTCGCACAAGGGAAATGATATTCGAACACGATTAATAGAGGTTATATGGCTTGTTAAAACGGATCATTTTTGCAGTGCTGGTGCAGACAAAAGGTGAAGCGGATCTAGGTCgttttaggtaaaaaaaaaaaagaaaagtaataaaaagtattACCAGAATGTAATAACGTTACATGTTATATTGttgaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262039 lncRNA upstream 92437 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA upstream 92468 11018140 ~ 11018900 (+) False G192945
TU262032 lncRNA upstream 114723 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA upstream 148519 10959214 ~ 10962849 (+) True G192942
TU261981 lncRNA upstream 343314 10767031 ~ 10768054 (+) True G192900
TU262096 lncRNA downstream 20275 11135080 ~ 11139366 (+) True G192997
TU262097 lncRNA downstream 20275 11135080 ~ 11139366 (+) False G192997
TU262094 lncRNA downstream 31999 11146804 ~ 11150208 (+) True G192995
TU262150 lncRNA downstream 268288 11383093 ~ 11386325 (+) True G193041
TU262157 lncRNA downstream 279289 11394094 ~ 11419102 (+) True G193047
XM_039784507.1 mRNA upstream 93351 10965298 ~ 11018017 (+) True srbd1
XM_039784158.1 mRNA upstream 154746 10953053 ~ 10956622 (+) True LOC120548129
XM_039784149.1 mRNA upstream 238928 10861935 ~ 10872440 (+) True LOC120548125
XM_039784150.1 mRNA upstream 238928 10861935 ~ 10872440 (+) False LOC120548125
XM_039784148.1 mRNA upstream 251817 10848185 ~ 10859551 (+) True LOC120548124
XM_039784261.1 mRNA downstream 242235 11357040 ~ 11367727 (+) True prepl
XM_039784262.1 mRNA downstream 242235 11357040 ~ 11367727 (+) False prepl
XM_039784690.1 mRNA downstream 316493 11431298 ~ 11433996 (+) True znhit2
XM_039783267.1 mRNA downstream 319795 11434600 ~ 11492318 (+) True lrpprc
XM_039783269.1 mRNA downstream 393290 11508095 ~ 11518919 (+) True abcg5
TU262031 other upstream 154790 10953139 ~ 10956578 (+) False LOC120548129
TU261925 other upstream 520209 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 522317 10586778 ~ 10589051 (+) False mrpl57
TU262093 other downstream 35514 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 242235 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 250583 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 603088 11717893 ~ 11746702 (+) False sdccag8
XR_005637197.1 other downstream 1132146 12246951 ~ 12278375 (+) True oprm1

Expression Profile