RNA id: XM_039784027.1


Basic Information

Item Value
RNA id XM_039784027.1
length 2518
RNA type mRNA
GC content 0.49
exon number 22
gene id cuzd1.2
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 13818639 ~ 13827297 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGAGAACAAATTCACCATGTGGACTCTCTTGGTTCTTTGCAGTGTGATCGCCTCGCATGGAGTCCAAAGTGCTGGTCGCTTTCAAACAACAGAGGAAATTAATCCAACAACAGATTATCCAGTTGATACAACGTATGCAGATGGTGTAACGGATTCTGCTGTAGCAGGTGTACGCTGTGGTAGCCAGTTTTATGGCAGCGGGGGCACGTTTTACAGCCCCAACTATCCAGGCCTATACCCGCCCAACGCAAACTGTATTTGGAACATCACACCAGGCAGTCAAATCGTGCAGCTGGACTTCCCTATTTTAAACATTGAGGATCACCCAACCTGTGGTTTTGACGCCATTTACGTCTACGATGGCCCCAGTACCAGTTACAGGCTTCTGGGGAAAGTGTGTGGCACAAACACAACCACCTTCCACTCCACTGGTACTTCTTTGACTGTGCGCTTCAAGAGTGATGGTAGTGTTAGCCGCCCAGGTTTTCGTGCGGACTTCCAAGTTGTGACTGGAGGTTCCTGCAGATACAACTGTGGCTACCAGGTTGGAAACTGCTCTTGCTCTTCAAGCTGTAGAGGGAACTGTTGTCCAGACTATGAAGattacTGTTTATCCACATCTGAACCAACAGTAACCGCTCAGCCCTCATGTCTTTACAACTGCGGCTGGTACCTAGGAAGCTGTTCCTGCACAAGCTCTTGTCAATACTATGGCAACTGTTGCCATGACTACCACTATTACTGCCCAACCACTACTGACAGTCCTCCCTCCACAGCTCAGCCCTCATGTTATAACAACTGCGGCTGGGACCTGGGAAGCTGCTCCTGCTCAAGCTCTTGTCAATACTATGGCAACTGTTGCTATGACTACAACTCTACCTGCATGTCAACCACTTCCAGTCCAACCACAGCTCAGCCCTCGTGTTATAACAACTGCGGCAGGCACATGGGAAGCTGCTCCTGCTCAAGCTCCTGTCAATACAATGGCAACTGTTGTTATGACTACTACTCTTACTGCCCCTCATACACCACAGATCAGCCTTCATGTCGTTACAACTGCGGCAGGCACATGGGAAGCTGCTCCTGCTCAAGCTCCTGTCTATACAATGGAAACTGTTGCTATGACTACTACTccTACTGTTCAGTCACAACTAACATGCCAACCACAGTAAAACCCTGTGGAGGTTCTCTGTTTGGCTCTGGCACCTTCTCCAGCCCGAACCACCCCAACTACTACCACGACAATGCCTACTGTGTCTGGCAGCTCAGTGCTCCGTATGACCAAAGAATCTTCCTGGCATTTACCTACCTGCAattGGAGAACTGCTGCTCCTGTGACTATATTTCCATCTACGATGGGCCGTCTGTTAGCTCACGGTATCTGGGGAAAGTGTGCAACAACAGTCTGAGTTCTTTCTACTCCACTTCCAACTACTTGACTGTGCTCTTCCGGACTGATGGTTCTGTGGTTGGCCGAGGGTTCAAGGCTGACTTCATAACCTCTCTGCCACCAAGCTCAGGTCGAGTGGACTGTTCCTCAGACAACATGATCATTGTGATCGAGAGGACTTACCTGAACTCCCTCGGATATGACGGCCACAGTCTGTACCTGAATGACCCGCACTGCAGACCCCAGGTTTCCACATATCAGGTGGTCTTCAACTTCGCCATTAACACTTGTGGCAATATTCGAAAGTTTGAGAGTGGCAGAGTTGTGTACACCAACACCCTCCGTGCCTACGCCTCCAGCTCCGGGGAGATCACACGCCAGTCTCACTTTAAGATGAACGTGGGCTGTCGAATGGAGCAGGACTCAGTGGCCCAGATCATGTACGTTGTCGAACATCATAATAACAGCAGCATTACAGGCACAGGCAGATTCAATACCAGCATGGATTTCTACACATCAAGCAGCTTCTACTACAAGGTTACTCAAGTTCCATACGAGGTGACACTCAACCAGAACTTGTATGTCCAAGTGGGCCTGAGGAGGGGTGACAGCTCCCTGGTTCTCTTTCTTGACACCTGCGTGACCTCACCATCACCCCATGATTTCCAGACCAGATCTTACTACCTGGTCCGCAATGGCTGTCCCGTGGACAACACCTACGGGAGCTACATCACTGGCACCCACGCCTATGCCCGTTTCACATTTAAAGCCTTCCAGTTCTTGCGAGCCACAGAGTCGGTGTACATCCAGTGCAAGGTCCTGATATGCCAAGCCTCTGACTACAATTCCCGCTGCCGTCGTGGCTGCAACAAACGTGTGGCCAGAGACTTGGGGTCAGAACACGACAGTCAAACTTTGGTCCTGGGTCCCATCAAACTCAAAGAACCTGAGAAAAAGGAAGAGACTCATAAGCAGGACAAGGCTTAACTTGATTCTGCAATGAGCTGCTTCAATCCTCTTAACTAATCGTTACAGCTCATTCTGTTCATTGTGACACTAAATTGTCTGCACCATTTTCCTCTTGATCACCTTCATTACCTGATTAAAAGCATCATCAAAAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262976 lncRNA upstream 63843 13753553 ~ 13754796 (+) False G193661
TU262975 lncRNA upstream 63899 13752743 ~ 13754740 (+) True G193661
TU262752 lncRNA upstream 613140 13123018 ~ 13205499 (+) False chrm3a
TU262620 lncRNA upstream 885785 12857800 ~ 12932854 (+) True G193395
TU262619 lncRNA upstream 932556 12857800 ~ 12886083 (+) False G193395
TU263017 lncRNA downstream 118776 13946073 ~ 13946351 (+) True G193701
TU263025 lncRNA downstream 144493 13971790 ~ 13972115 (+) True G193709
TU263180 lncRNA downstream 682302 14509599 ~ 14510920 (+) True G193837
TU263196 lncRNA downstream 864054 14691351 ~ 14692096 (+) True G193847
TU263261 lncRNA downstream 991553 14818850 ~ 14820963 (+) True G193902
XM_039783972.1 mRNA upstream 8745 13800246 ~ 13809894 (+) True cog2
XM_039782934.1 mRNA upstream 65962 13744588 ~ 13752677 (+) True klf5a
XM_039782935.1 mRNA upstream 71064 13744573 ~ 13747575 (+) False klf5a
XM_039783753.1 mRNA upstream 74988 13721815 ~ 13743651 (+) True pibf1
XM_039783754.1 mRNA upstream 106648 13707961 ~ 13711991 (+) True bora
XM_039784029.1 mRNA downstream 4256 13831553 ~ 13855767 (+) True hmx3a
XM_039784030.1 mRNA downstream 33803 13861100 ~ 13863306 (+) True hmx2
XM_039783139.1 mRNA downstream 137003 13964300 ~ 13970572 (+) True LOC120547617
XM_039784623.1 mRNA downstream 262930 14090227 ~ 14106778 (+) True abraxas2
XM_039784624.1 mRNA downstream 262930 14090227 ~ 14106778 (+) False abraxas2
XR_005637191.1 other upstream 1447369 12351324 ~ 12371270 (+) False LOC120548560
XR_005637192.1 other upstream 1447369 12351325 ~ 12371270 (+) False LOC120548560
XR_005637194.1 other upstream 1447369 12351325 ~ 12371270 (+) False LOC120548560
XR_005637193.1 other upstream 1447369 12351325 ~ 12371270 (+) False LOC120548560
TU262526 other upstream 1528407 12287046 ~ 12290232 (+) False sf3b5
TU263049 other downstream 247345 14074642 ~ 14076457 (+) True G193730
TU263682 other downstream 2525894 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 3062103 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 4741686 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 4853692 18680989 ~ 18682296 (+) False prdm8

Expression Profile