RNA id: XM_039784069.1


Basic Information

Item Value
RNA id XM_039784069.1
length 3906
RNA type mRNA
GC content 0.47
exon number 22
gene id camk2g2
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 10701254 ~ 10765131 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcccctcccactCTCTGCTCCTCTGAGCTCGAGAGCCTCTTCCCCCTCTCTGCCTTTTACGAGTTCTCCTCCCGAAACCTGTGCGAGGCGGCCACTGAAGCGCGAGGCgattccccccctctcccctacAATCAGTCAACATGGCTACAGTTGTTACCTCGACGAGATTTACAGACGAATATCAGCTGTACGAGGAACTCGGAAAGGGTGCCTTCTCAATCGTTCGCAGATGTGTCAAGAAGTCCACCGGCCAGGAGTATGCTGCTAAAATTATCAACACAAAAAAGCTCTCAGCCAGAGATCACCAGAAACTGGAGAGGGAGGCAAGAATCTGTCGTCTGCTGAAACATCCGAACATAGTACGACTCCATGACAGCATCTCAGAGGAAGGCTTCCATTACCTTGTCTTTGACCTcgTCACTGGAGGAGAGCTGTTTGAGGACATTGTTGCTAGAGAGTATTATAGTGAGGCAGATGCCAGCCACTGCATCAATCAGATCCTGGAGAGCGTCAGTCACATCCACCAGCATGACATTGTGCACAGGGACCTCAAGCCTGAGAACCTGCTCCTGGCCAGTAAGATGAAGGGAGCAGCTGTGAAGCTTGCAGACTTTGGTCTAGCTATCGAGGTGCAGGGGGACCAACAAGCATGGTTTGGTTTTGCAGGAACTCCAGGGTATCTGTCCCCAGAGGTGCTGAGAAAGGACCCGTACGGCAAGCCAGTGGACATATGGGCATGTGgtgtgATCCTGTACATCTTGTTGGTGGGCTACCCTCCCTTCTGGGACGAGGACCAACACAAACTGTACCAACAAATCAAGGCCGGTGCATATGACTTTCCTTCTCCAGAGTGGGACACAGTGACCCCCGAGGCCAAGAATCTGATCAATCAGATGTTAACGATTAACCCTGCCAAAAGGATCACTGCCGACCAGGCCATCATGCACCCTTGGATCTGCCAACGCTCCACTGTGGCCTCCATGATGCACCGTCAAGAGACTGTGGAGTGTCTGCGCAAGTTCAACGCCAGGAGGAAACTTAAAgGAGCTATCCTCACAACGATGCTGGTGACCAGGAACTTTTCAGTGGGACGGCAGCATACCAGCCCTGCCGCTACCACCAGCACGGCCTCAATGGCACAGGAAGcaTGCAAAACCTTACTAAACAAAAAGTCTGACGGTGTGAAGAAAAGGAAGTCCAGCTCGAGTGTTTGTTTGATGTCGCAGGGAACCAACAGTAAAAACAGTGTAGTAAGCAGCGGCAGCACCAAAGACAGCAGCATGTCATCCTCAGCACCAATGgGCTCCACAGAGAGCTGTAATAACgcagaagaggaggagatgaaaGCTGGTCCCCTGCAGGAGGCTGCTAGCAGCCCCAGTGTCCCTCAGACCAGTCCAGCTCAGAGCTCCTGTCCTGAACCAGAGTCCGCTCTGTCACCCCACGCAGGCATCGGCCGCAACCTGCAGCAGACTCGTAAACAGGAGATAATAAAGATGACAGAGCAGTTGATTGAAGCTATCAACAATGGGGATTTTGAGGCTTACACGAGAATCTGTGACCCTGGACTGACTTCTTTTGAGCCAGAGGCTCTTGGAAACCTGGTGGAGGGCATGGACTTCCACAAGTTCTACTTTGAGAACCTTCTGAGTAAAAACAGCAAGCCAGTGCACACCACCATCCTCAACCCCCACGTACATCTGATCGGTGACGATGCTGCCTGCATCGCCTACATCCGCCTGACGCAGTTCATGGACGGCCAGGGCCGGCCGCGCTCCTGCCAGTCGGAAGAGACGCGCGTGTGGCATCGCCGCGAGGCCAAATGGCTCAACGTGCACTTCCACTGCTCAGGAGCACCGGCTGCACCCCTGCAGTGAATTGCCAACCCAGGCCCAGCTTTGCCTGAACTCTAAAGCTGTTTGGAGCATTATTCTCCGCGGTCGGACCGGTGCCTGGATCCTGGCCGGGAAGAGGCTGCTTGGAAAGTTGTAAAAACAGAAAAGTGGGGAAAATACATatagaaaaaaagtttaaaaaaaaacagaaaaaaaaacaaccatattTCAAAGCTTGACTGAATGACCGACCAACACCAATCCAGTCCAACTCTAGCTAGGTGATGATGGCGCTCGGCTGATGTCAGCCCCTTCTTGCAGATGGTGCATGCTTCTGGTGGCGACACAGGGGTGATGCTGTCCTGGTCCTTGTCTCCCATGGCCTTTATTTCCCCTTTGTTTGGTCTGCTGGAAAAGTATTAaacctgtttaaaaaaacaaaaaaatacatatatataacaaaaaatcaaatacacttcacatacagtacatagtgAACACCGAACTGGGGGCGACAAGTATAATATCTGAAaagattagatttttttgtttagtcTTGAGAGAGCAGCAGAACGTCTACTTTTAATAGAAGTATTGTTTTACAGTTCACAGCTGAGGGTTGGATTTATGGGAACGGGAGCAACAAATATCTACTTGCTGTAATATCAGAATTTAACATCCAAGTTTAAGTGTCAGGTTTGAGCATCtgtacacagttttttttttaaggggttTAGAAATGATTCGTTACTGAAGGGACCtttttaattttgtgtttttctattgtgttcagctgtttttttgtgtacatgtgtttcaaagtattgttttgaaaaaagaattgtcatttttaatcaaaAGGGGTATTTTATTTAATAGAATTGTGTATAAATAGATATTTATATGGGAGTAAGGGGAAACATGTACTTTCAGGGTGTAGGGAGGGGATTTGAGCATGAATGggtattttgtttctgttttgagGTCCTGGGGTGTATATAAAAACTACTCACACaccatgcatgcacgcacgcacgcatgcgcacacacacgcacacacacacacatttaaggTCCCTGTGCTCCAGCCATTAGGGTTGAACCTCTCTTGAGCTTTAGACACAACAAACGTCCAGGCCAGCTCATCCTGAAGTTGCAGAGGGCCTCCATCTGTCTGCCCTGCGGTGTTTGGAGACAAACACTGAGAGGCGCCATGGGTCAAAGTCTAAAGCTCCTCACATGTCTGAACTACCTAATCTGAAAGCACAGACGCACTctcacactagggctgcacgatattagtaaaatatctaattgcgattattttgactgatattgcgattgcaatACGATTCATGATATTGGAGAGATTGATCGTTTTTGAATCattctcattttctttttttaaaaggatttgaggatctgtaccaaacagattttattttttttagtctgtaggatacgatttgtaggcaccacaatactttattttaaaaatggtttgacacatattttgcctttaacaaatattgcgccccccctgcgatttggatattgcactagttcatattgcgatttcaataaaattgcgattaattgtgcagccctatctcATGCCAACTTTTTACCTTTCTTTCATCTGTTCTTGTGTATTTGTGATGTGAAGCGTGACATATTTGAAATATCTAATGGCCTGTACTGTTTTTGCAGCCACTTACGGCTCAATGCTGTTGTGCTCGCTCTTCTAAGGGAGTGAACCTTTCTGCAACTTCAGGTTACGCTCACCAAAATCCTTCCCGCCCACCCTACCTCTACCCCTCTTACTTCCATCATTCCTGCCTCTTACTGTATACTCTCCACATCCTTCGCTAACCAGCCCCATTACTGTCCTAGTAGCGCCACGTCGTGTtatgatgattatgatgatgatgtcacccTTATGCCTGTCTCTTGTTCTGATTGTGTTCTTGAAATTTGTGTGTTGTCCGTCTTGGCTTGCTGTACTTCTGTGTGAAAGCATGTTAAAAAGGTAATGCAGCCGAGGgattggacaaaaaaaaaaaaaaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261878 lncRNA upstream 345139 10354551 ~ 10356115 (+) True G192821
TU261854 lncRNA upstream 380522 10314946 ~ 10320732 (+) False LOC120547509
XR_005637071.1 lncRNA upstream 380522 10314962 ~ 10320732 (+) True LOC120547509
TU261850 lncRNA upstream 409214 10264100 ~ 10292040 (+) False LOC120547507
TU261816 lncRNA upstream 462595 10236971 ~ 10238659 (+) True G192771
TU261981 lncRNA downstream 1900 10767031 ~ 10768054 (+) True G192900
TU262032 lncRNA downstream 173228 10938359 ~ 10996645 (+) True G192940
TU262036 lncRNA downstream 194083 10959214 ~ 10962849 (+) True G192942
TU262039 lncRNA downstream 253009 11018140 ~ 11018931 (+) True G192945
TU262040 lncRNA downstream 253009 11018140 ~ 11018900 (+) False G192945
XM_039783183.1 mRNA upstream 10169 10681261 ~ 10691085 (+) False si:dkey-174i8.1
XM_039783182.1 mRNA upstream 10169 10684480 ~ 10691085 (+) True si:dkey-174i8.1
XM_039783909.1 mRNA upstream 68334 10592785 ~ 10632920 (+) False kcnh1a
XM_039784148.1 mRNA downstream 83054 10848185 ~ 10859551 (+) True LOC120548124
XM_039784149.1 mRNA downstream 96804 10861935 ~ 10872440 (+) True LOC120548125
XM_039784150.1 mRNA downstream 96804 10861935 ~ 10872440 (+) False LOC120548125
XM_039784158.1 mRNA downstream 187922 10953053 ~ 10956622 (+) True LOC120548129
XM_039784507.1 mRNA downstream 200167 10965298 ~ 11018017 (+) True srbd1
TU261925 other upstream 110095 10586822 ~ 10591159 (+) False mrpl57
TU261935 other upstream 112203 10586778 ~ 10589051 (+) False mrpl57
TU261928 other upstream 112338 10586822 ~ 10588916 (+) False mrpl57
TU261926 other upstream 112473 10586822 ~ 10588781 (+) False mrpl57
TU261892 other upstream 259169 10441527 ~ 10442085 (+) True G192834
TU262031 other downstream 188008 10953139 ~ 10956578 (+) False LOC120548129
TU262093 other downstream 385188 11150319 ~ 11152241 (+) True G192994
XR_005637149.1 other downstream 591909 11357040 ~ 11365604 (+) False prepl
TU262145 other downstream 600257 11365388 ~ 11368623 (+) False prepl
XR_005637161.1 other downstream 952762 11717893 ~ 11746702 (+) False sdccag8

Expression Profile