RNA id: XM_039784452.1


Basic Information

Item Value
RNA id XM_039784452.1
length 2402
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC120548306
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2657857 ~ 2663678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCAACCTGCTGCATGTTGTGTAACTTTCCCATATTTATTGTAGACTGTTTGGATGCAGAGGACAACACCTCAGACATTGGTGTAGGGAACTCATTCGGTGTCTTGCAGCTGTCAAAGGTTTCACTCTGAACAATGGAAGAATTCATCCAAGATGTTGTGACATGCATAATCTTCTTTATTGGACTTCCTTTGGCCCTCGTAGCCATATCTTGTCTTCATTCTCTGGTGCAAAAGGATAATGTCGCTCCGATCTACGTCATCAACCTTCTCATTTCCGACCTCATTCAGTTCTGCTGCATGATCAGTTTTGTGGCACAACCTTATGACCTGCATATTGTCGATGGTGTTTACTTCTCTAGTCTGATGGCCAGTGCTGGCTTCATGGTGTGCATCGCCCTGGAAAGGTATTTGGTCGTCGCCTGCCCACTGTGGTACAGCTCCAGACGAACCATCAAGATCTCTGTGGTGGTCTGTGTCCTGGTCTGGATCCTTTCTCCCGTCTGTGTCATCCCTTTGTTTAACCGTGATTCTGAAGATTCCACAAGCATCATCTTAGTCGGCATCTTTTTCCTCCTTCCCCTCCCACTGCTCATATTTTTCCTGGGTGGGACCCTCAAAGCCCTGTCTGCTTCCATCTCAGTTCCTGCTGATGAAAAACGTCGAATTGTGGCAACGTTGGTCCTGCTGCTGCTTATTTACACGCTGCTGTTCCTACCCAGACCCATAATGGTTCTGAAAGAGGAAGACATTGGTGGCTCAGTGATTAGTGTGTTTCTCAGGTTGAGTCCTCTTGCAGACTTAgttctgtgtgttttcatgagGAAAGGGGCCATAGACAAGTTTTTGgcctctgtgtgttgttgctgAATGGACAGCAATGATGTCAGCAGTTCAGCAGTATAAGTGATGACAACATGTTTAAGCTGCAGGGCTTCCGGAAAGTTATCTGaatacaggaaattaagtctttgacgctcaaaaaaAGGGGGATGGGGTGGAGGGTTTAACAATAATAGTTTAACCCCCCCATAAATTTATGataatgatgaatgtaaaatattaactgttataaaaaaattataagtgGTTGGCTTTCTTGATTCAATGTAATTGGCaagcaaataatttttttttcacacaaaccTCCCCAACTCTGGGTGGGACTGGGTTGCGCCCAAACCTCACAGCACATAGCATGGCCAGCACAGCCGGTGCGCTTCATGAGTTTATTCAGTAAGCAGAGAAGTGTAAAAGACCGATCCACAGTCTGGGCTTCTTTTCCTAGAACTCGTATTTCTTTCAGAGGACTTTGTTCAATAAATCCATATTCTTCGATCTAATATTGATAGTCTTTTTTCCATATCTTATtcattttaggtcattttattgTCGTTAGCTATGATGCTAAAGCAGTTTTAGcattcccatgatgctttggaAAGTTTCTGAACAATCAGAGGAGTTGCTTTCAGGGCCCATGAAATAAAGTCGGAAATATACATATTTGACCTACCCACAATGCTGCAATATATAGTATTGATTTTGGCTTTTTGAATTGATAGACATTTTGAAATGAGACATTTGAATATAGTGCTCACTGCTCATATGCCTACATGTATGTATCTGGATAAGttagtaaattacatttgagaaatccccttgattatgtctgatatttttggcagggggaaagcAAGTGTTGGTTTCTCTTTGCATAATgaaaatgcttttttgtttgtttttgacttGTCTGCTGGGCTGATGTACTGATGTATattgatttttacattttgaattgagtGCTGTGCTTTTTGAATTCgacattttgaattgagacATTTGAATATAGTGCTCATTGCTCATATGCCTACATGTATTTAGTTGGACAAATTGGTAAATTACAGGGTAGTggacgggggagggggggtggcttTGAGGTTTAGTTTTGTCTTAATACGGGCTTGgctgtagtgcagggaaatatgatccgccgtgagcatggtgtgttttattttgaaaattaaccggatgttttattttgcttctgtgctcgaGTTCCTGTCCCACACTATCTGCCCATGCTTTTGACTGTTTGCTTTTCGCCGTTGCATATGGCTTGAGTAGAAGTACTGCTGAAAGAGGGAGTTCATATCTGACTGCTATATCGGCTAGTGGAAAGTTACTGACAGTTTGTGTAGAGCGCTGACAACAGAGGAAGTAGGCCAACCATAAACTATTGAATTATATTTGCTTAGCTTGTGGGACACATATGAACGGAACATGTGCGACCATAAACAATTGACCCTGGGAGAAGCGGCCTTGACCGTgagtacttaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259802 lncRNA upstream 14403 2642020 ~ 2643454 (+) True G191340
TU259807 lncRNA upstream 80649 2576231 ~ 2577208 (+) True G191345
TU259794 lncRNA upstream 122925 2530824 ~ 2534932 (+) False G191335
TU259797 lncRNA upstream 123581 2533743 ~ 2534276 (+) False G191336
TU259798 lncRNA upstream 123581 2533816 ~ 2534276 (+) True G191336
TU260135 lncRNA downstream 34285 2697963 ~ 2700447 (+) True G191548
TU260147 lncRNA downstream 39520 2703198 ~ 2707931 (+) True G191555
TU260148 lncRNA downstream 52358 2716036 ~ 2723106 (+) True G191556
TU260149 lncRNA downstream 52358 2716036 ~ 2725525 (+) False G191556
TU260155 lncRNA downstream 74466 2738144 ~ 2740053 (+) True G191560
XM_039784693.1 mRNA upstream 20581 2529180 ~ 2637276 (+) True LOC120548433
XM_039784446.1 mRNA upstream 149476 2504767 ~ 2508381 (+) True rps27a
XM_039784136.1 mRNA upstream 457400 2193300 ~ 2200457 (+) True LOC120548117
XM_039783720.1 mRNA upstream 545986 2006144 ~ 2111871 (+) False LOC120547899
XM_039784458.1 mRNA downstream 165381 2829059 ~ 2829748 (+) True LOC120548310
XM_039784697.1 mRNA downstream 430289 3093967 ~ 3110958 (+) True LOC120548437
XM_039783787.1 mRNA downstream 460089 3123767 ~ 3137751 (+) True znf365
XM_039783786.1 mRNA downstream 460089 3123767 ~ 3137751 (+) False znf365
XM_039783788.1 mRNA downstream 460089 3123767 ~ 3137751 (+) False znf365
TU259649 other upstream 341622 2268828 ~ 2316235 (+) True LOC120548303
unassigned_transcript_1105 other upstream 536392 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 539037 2118747 ~ 2118820 (+) True trnat-agu_14
TU259632 other upstream 553160 2047957 ~ 2104697 (+) True G191236
TU260161 other downstream 92476 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 98372 2762050 ~ 2766062 (+) True G191567
TU260196 other downstream 111630 2775308 ~ 2778367 (+) True G191573
TU260181 other downstream 159686 2823364 ~ 2921724 (+) False G191571
TU260292 other downstream 430306 3093984 ~ 3095422 (+) False LOC120548437

Expression Profile