RNA id: XR_005637167.1


Basic Information

Item Value
RNA id XR_005637167.1
length 323
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC120548320
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 14908613 ~ 14909362 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGCCCCGCCCCCAGAGATCCCCCTTCCTCCATTTTGAACTGCTCATGTTCATTGTTTATGTTGGTTGCGGAGGTCTTTATTCTAGAGACGTCAGATTTATCGGGTGGCTGCAATTAGAAGAAAGGACTTTACTTTTGACCTAATCTCCCAGTCGATGGGAGTGTGTTCTCTGCATATTTATTTGGggacTAAGGAACAAACGGAGGCTGCACTAGCATCACCagaagggagagatgaggagtaGAGGGAAAGCAAAAGATGTTGAATAGATTATTTGCTATATTAGAGATTgccattcaaaaaataaatgcatcaaATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263261 lncRNA upstream 87650 14818850 ~ 14820963 (+) True G193902
TU263196 lncRNA upstream 216517 14691351 ~ 14692096 (+) True G193847
TU263180 lncRNA upstream 397693 14509599 ~ 14510920 (+) True G193837
TU263025 lncRNA upstream 936498 13971790 ~ 13972115 (+) True G193709
TU263017 lncRNA upstream 962262 13946073 ~ 13946351 (+) True G193701
TU263266 lncRNA downstream 2110 14911472 ~ 14911724 (+) True G193907
TU263268 lncRNA downstream 12983 14922345 ~ 14922560 (+) True G193909
TU263297 lncRNA downstream 140417 15049779 ~ 15053382 (+) True G193928
TU263303 lncRNA downstream 156990 15066352 ~ 15067060 (+) True G193934
TU263304 lncRNA downstream 163536 15072898 ~ 15073310 (+) True G193935
XM_039784514.1 mRNA upstream 91277 14769458 ~ 14817336 (+) True LOC120548334
XM_039783445.1 mRNA upstream 191421 14694920 ~ 14717192 (+) True smndc1
XM_039783444.1 mRNA upstream 191421 14708497 ~ 14717192 (+) False smndc1
XM_039783441.1 mRNA upstream 220562 14683067 ~ 14688051 (+) True ppp2r2d
XM_039784919.1 mRNA upstream 312953 14575725 ~ 14595660 (+) False mgmt
XM_039784460.1 mRNA downstream 21213 14930575 ~ 14959263 (+) True LOC120548312
XM_039784926.1 mRNA downstream 110183 15019545 ~ 15041272 (+) True slka
XM_039784927.1 mRNA downstream 110187 15019549 ~ 15041272 (+) False slka
XM_039784929.1 mRNA downstream 110199 15019561 ~ 15041272 (+) False slka
XM_039784928.1 mRNA downstream 110809 15020171 ~ 15040379 (+) False slka
TU263049 other upstream 832156 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 2537343 12351324 ~ 12371270 (+) False LOC120548560
TU263682 other downstream 1443829 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 1980038 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 3659621 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 3771627 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 3935068 18844430 ~ 18850903 (+) True G194908

Expression Profile