RNA id: XM_039784927.1


Basic Information

Item Value
RNA id XM_039784927.1
length 5133
RNA type mRNA
GC content 0.47
exon number 19
gene id slka
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 15019545 ~ 15041272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCACAGATTCTGCTCTGCCGCCAAGTGGAGTTCACTGTGCTGAACCTCTGACGGTAACCACGTATATGTGTGTAGGCCTACGGCTGTTCGTTACGAACAGCAGAGACGGTttaacagttttgtttttgaacgGAAATTACGTGCCGTTACGTTACCGAGCTTGACGCTGGTCTGCTAACTTCTGTGTGGTCAGCCAACCGAAGCATGGGGTCATCGGACTATCCGTGTTTTACTCGCTAGGTTAGCTAAATGATTAAAATGCCGCGTTGAGGTTTATACTGTGGTCGATATTTGCTTCttaatgttatttatttgattttattaaaatggaatTACTAGCCTGTGCGTATTAGCGAACTCGTCTCTGTATCCCTCATCTCATCGACCAGCGTCCTGAACACTGCTAGCTATGATGCGATTATGAATAACAGCCGTCGAGGGAAATAATTGCCATTATCACAGCTGAATGGCTACTATAGCAGCTTGTCTGCCTTCATTTGACGCCTGCATGCTGTTATTTCGATAGCCATTTGAGCTCCGCGTCGGGAGGAACCGCTATATTCTTTGCGGAAATAACCGAAGTGATCGCATTCACTGCACCGTAGTTCACATCCGAAAGATGTCTTTCTTCAATTTTCGTAAGATATTCAAGTTGGGGCCtgataagaagaagaagcagtATGAACATGTACATAGAGACGTTAACCCCGAGGAAATATGGGATATCATTGGGGAGCTGGGAGATGGAGCGTTTGGGAAAGTCTACAAGGCTCAGAACAAACAGAATGGGACCCTCGCTGCTGCCAAGGTTAttgacacaaagacagaggatgAATTGGAGGATTACATGGTGGAGATTGACATTCTGGCCTCCTGCAACCACCATCACATCGTCAAACTGCTGGATGCCTTCTATTTTGAAGGCAAACTTTGGATTCTGATTGAGTTTTGTGCGGGTGGTGCAGTGGATGCCATCATGCTGGAACTGGAGAGGCCCCTGACGGAGCCCCAGATCCGTGTGGTGTGTCGGCAGACCTTGGAGGCCTTGTCTTACCTCCATGAGAACAAAGTCATCCACAGAGACTTGAAAGCCGGGAACATTCTCCTCTCCTTGGATGGAGAAGTGAAACTGGCTGACTTTGGGGTGTCTGCTAAAAATACCAAGACGTTACAGAGAAGAGATTCTTTCATCGGCACTCCGTATTGGATGGCCCCAGAGGTGGTAATGTGCGAAACTTCCAAGGACCGTCCATACGACTTTAAGGCCGACATCTGGTCCCTCGGGGTAACCCTGATAGAGCTGGCACAGATTGAGCCACCCAACCACGAGATGAATCCCATGAGAGTGCTGCTGAAAATAGCCAAGTCCGAGCCCCCCACACTCATGCATCCTTCTCGCTGGTCACCGGAATTTAACGACTTTCTGCGGAAAGCACTCGATAAGAATGTGGACAATAGGTGGAGCACATTACAGCTTCTACAGCATCCTTTTGTTACCAGTGTAACTGATAGCAGACCTCTCAGAGAACTCATAGCCGAGGCCAAAGCTGAAGTCACAGAGGAGATCGAGGATagcaaagaggaggaggaggaagaagagccTGATACACCTTTGGCGGCTCCTGGGCACAAGCGAGCGCCATCAGATGCCAGTGTGGCCAGCTCAGAGGACGACAAAGTCCCACCAACTCCCTCCACGCTGGAATCTGTTAAAGAAAAGATGGAGGCAGAGCGTGCTGAGGACCGGACCAGTGATAAGCTCTCTGATGAAGGATTTGGAACAAGTGAGGTAGacaagacagaggaggagaaactCAACGAGGTCTCTGATGCCAGTAATGAAGACCTGGCCTCTGGGCTAATAGAGCCCACCAAGGACTTTATCTCCCAAGATCCTAAAGAACCTACTAAACCAGAAGATGCTCACGCTGAAGAGATTGCTGCTGAGCCTGTAGTACCACAGCCAGAAGAACCTGTAGACCCAGTGGATACACAAGAACTTGTCACAGATGGTCAAGAAGTAGAGGAACAGAAGGAGACAAAGGAAGAGAAAATGCAGGATGAACCTACCCAAGTAATAAAAGAAGCAAGAGAGCCAGAGGAGGTGAAAATAGAGGTAGAAAAAGAAGATGGTACAAAAGAATCCATAGACTCACAAGAGCAACCTGAAGATGCACCAGAAGAACCGGAATCCATATCAGGAGAAGTGGCACAGGCAGAAGAAGAAAGCAAAGAGCCAAATGAGGAAACGCCTCACCATAAAGTGACAGAGGACAGAATAGAAGACACAGCTAATGGCACAGTCCTCAATATAGACACACAGAATATAGAATCAAATGTATTGGACACAAACATAaatggagagacagacacaaagtcGAGCGTTGGTGAGTCGTCAGCTGAGGTGTTGTTGGAGAAGGAGGCCATAGAGAGTCAGCCAGAGGAAAAGCCTGAAGATGAGGCCACTAAGGAGGCAGAGCAGCCTGAACAAGAGAATCAGCCCAAGGGGGAGGTTGATCTGGAGGAACAGGCCCCAACTGAATCCAAAAATGGAGTCAGTGATGAAGCCAAAGACACTTCTGAGGATTCAGAACAAGTGATCCCATGTAAAGAAGGTCCTGTGAAGGAAGATGAGGAGAAAGCTACTTGCGCAGATGAGAGCATTTCCCAAGATACTGTCTCCGTCCCGGAGAGCGAAACCGATTCAGAAAGCAAGATTGAGCATGGAAGCCCTGCTGTGATCAAGCCGGATTTGGAGAAGGACTCTGACTCTGGAAGCAGCTCTGCTGCTGATAGCAACAGTCTTGACCTCAATCTGTCCATCTCCAGCTTCCTGTCCAAGAGTAAAGAAGGGGGCTCTGTGTCTATGCAGGAGTCAAGGCGTCAGAAGAAGACTCTGAAGAAGACACGTAAGTTCATGGTGGATGGCGTGGAGGTCAGTGTGACGACATCAAAGATAGTAACCGATAACGACGCCAAGAGCGAAGAGATGAGGTTCCTGAGGCGGCAGGAGTTGAGAGAGCTGCGCCTCCTGCAGAAAGAGGAGCAGAGGGCCCAGCAGCAGCTAAGCAAcaagctgcagcagcagagagagcagaTCTACCGCCGCTTTGAACAGGAAACTACTGCTAAGAAGCGTCAATATGACCAAGAAGTGGAGAACCTtgagaagaagcagaagcagaCCATTGAGCGACTGGAACAGGATCACACCAGCCGTTTGCGAGACGAAGCCAAGCGCATTAAAGCGGACCAAGACAAGGAGCTCTCCAAGTTCCAAAACATGATGAAGAACCGGAAGAAAGAGGTCAAACAGGAAGTTGGACAGTCTCCCAAACATATGAGAAAAGAGCTCATGAAACGCATAAAGGAGGACCTATCGTTACTTAAGACCGCAGAGGAGCAGGAGTTCCTACAGAAGCAGCAGCAAGACCTGGACGGAGCGCTGAAGAAAATCATCCAGCAGCATAAACTGGAGATCACCACTATTGAGAGAGACTGCCTGAACCACAAGCAGCAGCTGATGAGAGCTCGAGAGGCGGCCATGTGGGAGTTGGAGGAGCGCCACCTGCAGGAGAAGCACCAGCTGCTGAAGCAGCAGCTGAAAGACCAGTACTTCCTACAGAGACACCAGCTGCTGAAGAGGCATGAGAAAgaGATGGAGCAGATGCATCGCTACAACCAGCGGTTGATAGAGGAGATGAAGAACAAACAGACTCAAGAGAGGGTTCGTCTTCCCAAAATTCAGCGCAGCGAGGCCAAGACTCGCATGGCCATGTTCAAGAAGAGCCTCCGCATCACCGCCACTGCAGCTGTCACGCCCGAGCAGGAGAGAGAGCGGATAAAACAGTTTGCTTCTCAGGAAGACAAGAGGCAGAAGAACGAGAGGCTCCATCAACACCAGAAACACGAGAACCAGATGAGGGATCTGCAGCTGCAGTGTGACTCAAACATTAgggagctgcagcagctgcagAACGAGAAATGCCATCTTCTGATTGAACATGAGACCCAAAAGCTGAAGGAGCTGGATGAGGAGGACAGCCAAGAGATAAAGGAATGGAGAGAGAAGCTAAGACCCAGGAAGaagGCGTTAGAGGAGGAGTTCACACGGAAGCTCCAGGAGCAGGAGGTCTTCTTTAAGATGAGCGGTGAATCCGAATGCCTTAACCCCACCACCCAGAGTAGAGTATCCAAATTCTACCCCATCCCAAACCTGCACAACTCTGGATTATAGCctcgtgtctgtctgtgctacGAAACAGACTCCTATCTAACTTGGCTGCGCTCACTGACTCATCCTGGTGGAGTGGCATCATTTCTCCGGCTGCTTAGATTCCACAGTTAGTGAGCATGACATGCCTATACACTGTTCCCCCACTTAATCACATTTTTTCTCAGCTTGTTGGGGAATGTCCAATGATAATAATATGCACTTTTTTGAGCATGTTGAAATTTTAAAAGCCTGCAGTTGGTAGCGAAGGCCAATCATGTTTATCAGATTATTGTAAGCACAGCCTACTGCAGTATGAATGATCTCTAGTGCCTCATATGTTCAATTCATTTCTGCATTTAGGCCCCTCCCTGTGTAATACAGCAAATACGGTGCCCCCTGAAAGTCTTGCACTTCAATAACTAGCTATCATTTTCACCCACAATCCCAAGATGTTGAGAGattattttaatcatttcacATGTACTGGTGATTAAGACGACTCTGAGATCTTGTGTTGCTGCATGTAAGGTAGAGCTGGTGCAACGGAGATGTACTGTTgagttaaaagaaaaagtctgTAGTTGTAAGACTCTGTTATGGCTGTGTAGTCTTATGTCAAAAACAGCGCCATGTTGAAATCACAAGGCTACGAGTTAAAATGAAAAGGAATGTACCGTGTTGTTAATGAGTGAAATGTTACCTGCGTGTACCTACATATGAAGTTCAATCCGATATTGTGCTTGTCATGAGGGTTTTACAATGTTGAGAACAAGAATATATCTATTGTTTTAGCGCatcatttcatttaggtgcTGTACTCCCACTTAGTTAAAGAATGGAGAAtgaagaaatacatttttatatgtatatatagaaaATTGATCACCTTGACATTAAACCTAAAGGAATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263268 lncRNA upstream 96989 14922345 ~ 14922560 (+) True G193909
TU263266 lncRNA upstream 107825 14911472 ~ 14911724 (+) True G193907
XR_005637167.1 lncRNA upstream 110187 14908613 ~ 14909362 (+) True LOC120548320
TU263261 lncRNA upstream 198586 14818850 ~ 14820963 (+) True G193902
TU263196 lncRNA upstream 327453 14691351 ~ 14692096 (+) True G193847
TU263297 lncRNA downstream 8507 15049779 ~ 15053382 (+) True G193928
TU263303 lncRNA downstream 25080 15066352 ~ 15067060 (+) True G193934
TU263304 lncRNA downstream 31626 15072898 ~ 15073310 (+) True G193935
XR_005637195.1 lncRNA downstream 85535 15126807 ~ 15129135 (+) True LOC120548564
XR_005637098.1 lncRNA downstream 96356 15137628 ~ 15143595 (+) True LOC120547672
XM_039784460.1 mRNA upstream 60286 14930575 ~ 14959263 (+) True LOC120548312
XM_039784514.1 mRNA upstream 202213 14769458 ~ 14817336 (+) True LOC120548334
XM_039783445.1 mRNA upstream 302357 14694920 ~ 14717192 (+) True smndc1
XM_039783444.1 mRNA upstream 302357 14708497 ~ 14717192 (+) False smndc1
XM_039783441.1 mRNA upstream 331498 14683067 ~ 14688051 (+) True ppp2r2d
XM_039784611.1 mRNA downstream 35331 15076603 ~ 15077961 (+) False sfr1
XM_039784612.1 mRNA downstream 35331 15076603 ~ 15077959 (+) True sfr1
XM_039784215.1 mRNA downstream 54496 15095768 ~ 15098983 (+) True LOC120548156
XM_039783184.1 mRNA downstream 63532 15104804 ~ 15105718 (+) True LOC120547654
XM_039783471.1 mRNA downstream 168567 15209839 ~ 15233875 (+) True zgc:91976
TU263049 other upstream 943092 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 2648279 12351324 ~ 12371270 (+) False LOC120548560
TU263682 other downstream 1311919 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 1848128 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 3527711 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 3639717 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 3803158 18844430 ~ 18850903 (+) True G194908

Expression Profile