RNA id: XR_005637195.1


Basic Information

Item Value
RNA id XR_005637195.1
length 1337
lncRNA type inter_gene
GC content 0.38
exon number 7
gene id LOC120548564
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 15126807 ~ 15129135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGGCTTTGGTGTTTTACCAAAACAAAGCTACTTATgttatttttactgtttttgcaGACATAGGCTTAAAAATTGCATGGTTTAATatgttactttttcaaacagtATCTTCATGCCCTCTCAAGCCACATTTTTGTGGTCGATCCTCTGCAAGGGACAAATGAAGTTGAGGACTCCAGAAAGGCTGGCCACAGATTTGGACAGTACTTCAAGATGCGCCGGAACAGACTTGGAAAGGAGGACTGGGTTAACATAAAGTGGAAGCCTGGGAAGATAACCCACACCTTTCAGGAAGATGTAACCAGTTGTGGGGTCTTTGTCATGCAGATGGCCAAGATGACAGTGATGGAGTTTCCAAAGATGTCACAGTCGTTTCAGATTGACTCATCCAAAGAGTCTCTTAAAAATCAAAGAAGACTCATGGCAGAAGAAATTCTCATGGCATCAGTTTCAAAGGATGAGTTCTGCTCCTTCTGTGGAAATAAGAACCTGCCTGCTGGAGATGATGTTTGGATTCAGTGTGGAAATTGCACAAGATGGTTTCACACGCAGTGCCTAGGAATGACTGCAGCACAAATACCAAACAAAAATACCCCTTgggattgtgtgttgtgtatcagCCCTAGCTAAAGAGGCTGTAGcatCTTCATGCCCTCTCAAGCCACATTTTTGTGGTTGATCCTCTGCAAGTGCCAAATGAAGTTGAGGACTCCAGAAAGGCTGGCCACAGATTTGAACAGTACTTCAAGATGCACCGGAAAAGACTGGGTTAACATCAAGTGGAAGCCTGGCAAGATAACCCACAcatacatgcttttttttttttacactttaagtAATTGTGTTAGTACAACCACCTTTCCTGTAGTATTTACTAAAATATTTCTATATGTAGTTTGAAGACATTTCTTGAGATAAATACCCACAAAAAGTATGTGTCTTTTTGAAAAGTAATAGTTATAGTTCAACCATTTTGAGCACTTACAGTGAAAAAAGTATGGAAACAATTATTTTGAATGATTAAAGTATTACATGTTTTAAGCAATaaaaaatgtgccaaaaataggattatagttatttttttaaagtgactgCTGTAGTGCAACCAACAGGGGGCTTTCTATGTGCGTATTACTGTTGGAGACATGAATCTTTGTTTATATGACacatattaaatgtttttggcaAAAACAATTCACCAAAATTaggattatgttttttttcagaaggcaagtgctgtagtacaaccagGAAGGGGCCTTCTATGTGCTACTACAGAAATCAGAATGCGAAAAGTccctttcattgatttttggtgaatattttaaactttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263304 lncRNA upstream 53497 15072898 ~ 15073310 (+) True G193935
TU263303 lncRNA upstream 59747 15066352 ~ 15067060 (+) True G193934
TU263297 lncRNA upstream 73425 15049779 ~ 15053382 (+) True G193928
TU263268 lncRNA upstream 204247 14922345 ~ 14922560 (+) True G193909
TU263266 lncRNA upstream 215083 14911472 ~ 14911724 (+) True G193907
XR_005637098.1 lncRNA downstream 8493 15137628 ~ 15143595 (+) True LOC120547672
XR_005637099.1 lncRNA downstream 8500 15137635 ~ 15143595 (+) False LOC120547672
TU263319 lncRNA downstream 29247 15158382 ~ 15159669 (+) True G193947
TU263331 lncRNA downstream 40471 15169606 ~ 15171642 (+) True G193957
TU263343 lncRNA downstream 100812 15229947 ~ 15233788 (+) False zgc:91976
XM_039783184.1 mRNA upstream 21089 15104804 ~ 15105718 (+) True LOC120547654
XM_039784215.1 mRNA upstream 27824 15095768 ~ 15098983 (+) True LOC120548156
XM_039784611.1 mRNA upstream 48846 15076603 ~ 15077961 (+) False sfr1
XM_039784612.1 mRNA upstream 48848 15076603 ~ 15077959 (+) True sfr1
XM_039784926.1 mRNA upstream 85535 15019545 ~ 15041272 (+) True slka
XM_039783471.1 mRNA downstream 80704 15209839 ~ 15233875 (+) True zgc:91976
XM_039784302.1 mRNA downstream 120065 15249200 ~ 15337542 (+) True LOC120548216
XM_039784300.1 mRNA downstream 124115 15253250 ~ 15337542 (+) False LOC120548216
XM_039784303.1 mRNA downstream 210992 15340127 ~ 15342013 (+) True LOC120548217
XM_039783244.1 mRNA downstream 496182 15625317 ~ 15632128 (+) False plek
TU263049 other upstream 1050350 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 2755537 12351324 ~ 12371270 (+) False LOC120548560
TU263682 other downstream 1224056 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 1760265 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 3439848 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 3551854 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 3715295 18844430 ~ 18850903 (+) True G194908

Expression Profile