RNA id: TU263343


Basic Information

Item Value
RNA id TU263343
length 3842
lncRNA type sense_over
GC content 0.41
exon number 1
gene id zgc:91976
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 15209839 ~ 15233875 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCAAAGgtgcaaaaaatatttttaagtatgtcaaactttatttttcaaaaaactaATGATGtccaacaaaatatttttagaTTTGTACCTTTTTCAACATGAATAATTGAGAGCATAAGAATCGAATGTGGTATAACGTTATTCCAGTGCCTTTCTTAGCTTGATTGTAAAACAGTTCAAGTACTATGTGTCTTGTCTCTCTGCCGCGGGTGTGACCACGCTGTGGTACGGGGTGGTACATAGTTAACAGTCTCGTTCCCATGAATGTAAAAAACAACTACGCCACAGCCTTACCAGAAAATCGGTGTACCCAAAAAGAAGTGCAGTGAAATATCCTGTTTATTTATTAATGCTTTACGATGTCTGTTTGTGCTTAGTTTGTTAATGCTGTTCTAATAGAAAATAATGACTgttaattgtaattttttttttttttttttttaatgtctaaCATTTCATTTTTACCAATCTGTCTTTTACCAACACAAGTCATGTTCATAGCCCGATCACTGACCTTCAGTTGACTGCTAATTTTACTTTCCACCTCTACATTATCTGCATCTTATCACTGCCTGATTGGAAATTGGAGAAGACGTGTCTAATACCACTTTCACTTCGTGGGCTCAAGCAGGGTTGACTTGTGTTTTGAAAGGGTTATTCCGCGTTGATCGACTCTGCGTCACGACCCAGGTCTAGAGGTCGGTTGGACATGGGCCGTTTTTCAGTGTAAACTGCACACAACCAGCTAACAATCCCGGCGGCACAAATTGTAGTTGGTTGTCACTCATCTCATCTGACCAGTCCACAATACACAAAACTGGCTAAAATGGCGTTCAAATTTCCCTTCTAAAATCTGGGTTGAACAGGggttgatgcatagactgtaaaaataaagccaaaacagtataggtcataaatcCCACTACCTCAGTGTTGGCAGATGGGACATGGgccaagctaaaaaaaaatctaaataaatttgtattttttggATCGTTTGTTCAAATGTTCATTTTCTTACATCAGGTGACAGACCAGGAGTtgtaattccactgtttggccACTATGTTCCATATGCATATCCTGGGGGCCTGCTATACCCTTTTGATGTATAATAAAacctggatacagctttgaggTGGAGCCCTGTTAATTACTAGAGACCTCTGCCAGCTGAGCCGGCGACTTCAAGTTTAGCTCTCCATTAAATTGAATGtggattaaatgatttaattgtgcggctcttctagactttccgaATGTTATCGGACCGAATGGATTAAATTCTGATAGCGAAAGGAGTCCTTTCGCTGGGGTTGTATgatgcaaaaaagaaaatgtatttcctgATTCACACATCTCTTTCGCCATGCAAGTCAAGGGGCATTTTTTTGACCAGAGGGCATCACGTGACTGTCCAGGAGTTGCATTCCGCTGTTGAGCTGCTATGTTCATTTTGCTTCAAAGCCCGGGCACTTCCTGGGGTCCTGCCGTATCTGTAATAATTTGGCTAACctttgtacagtgggaggaagtggagatgaGTCATCCAtctttatacagtctatgggttcAACCTATTGGAACATCTATTTTGGCAAATTATGTCTACAAGGGGGCAAATGTACGAGATGCATAACTACCTGTGtaggtatatttatttcaacataaccACAAACCTGCATAATCAACTAATCTAATAATGGCCTATACCGTAAAACTCTCCCTCTGCACTGTGGTTGGTGCTAGACTGAGAACTGAGCCCCGTTGCATGCCCCTAGCAAGTAAACCAGCCAGCTGTCTGGCCACTAAATTGATCAAATGTAACAACTTTTTTCATTCACATACTCTTGTCACAGCGTAgcaaagcacattgctatcgccagatgagtgacaacttAGTTTGGCTCACTGTCTTTAACCAGCGTAGCATGAAGGCATGTTgagtggaattagcaagctagctaactcGCCAGCCGGCCACAGCTGGCTGCTCGGTCCCACAGCTCAATGGTGTTGCAGTTGATATAAGCGCCCTCTGAAAACCCAGCTTTAGAAAATAAACTTATGAAAATAAGTGTTTTGTATAATTCTCTCATCCACGGCACCGCCACGCTCTCTTCCCGGTCGCCCGAGACACAGGTCTGCAGCCGGCAGTTCAGTGTGGCTGCTGGCTGGCAAGAATCTCTTTTGTAAGATGAGTCGGCAAGCCTAACTTTGCTCTTATTGTTATGAAACTTGGTCCTAAAATGGTCATCTAACTAGCCTACTTCCCTTCTTTACTGCTactgttgagtgtttgatggtCGTATGTGCTTTATAACGTAATTGCTGTGAAACAATCGTAAAATAAGCTTTAATTTTTCTCATTCACAGCTCGTTCcgcgctctctctttctcggtCTGTCTGCTCGCCCGAGCTCGCACCACACGTCTCTGCAGAACGCATTACAAACTGCAGGCCTACTGTACAATAAGGAATTCAAGTAAAAAACACCAGTCCTTGTAGTGTGCAGCTGGACTGTGTGACGTTGGCTGTCCACCTCGCCAATTTCCAGCAAGTGAGGTGGACCTAATTGGTATGGATCGGTCATATCTGAGTTGTCGTGACCAGGGATAAACGTGTtgactggcttggtttgaattGACAAAATAAGGGTTGAACACGGGTCAGATAACCCCGGTCTGACCCTGGTCCTTGGTGTGAAAGAGGTATAAGAGGTATAAGGTGCAGAGTTAAGTTATTCTGGACCTGGAAATGTCATCTTTTGCTCAGGAGATAACAAGACCCTCCCTTTTTCCCCACATTGAGTCCCATTTTGAAATCCGAATTATCCTCATTACTGTCTGGTCTTGTAACCTTTGTGGTGGTAATGAGATCTAGAGGAAAATGTTCAATGTCAACACGTGTTGAGTTTAGGGAATGTCAAAGTTGTGAAAACAGAACCTTCAGGTAAAGTTTCTGAGCATGTCTGTAATAAATCTGCGCGCGTACTTTGTGTGGTTCGTCTCGTACTAAATCAAGCTGCTACCTTCCAGTTTGAAGAcggtcggtctgtctgtctgtctatcttctGTATTGCCTCGTTAAGTGCAATGCCAAAACTAGAAGTAGCTCAACATGGAACTTGTGTGGGGAAGAAGCTGAAGCATGATGCACAGCGCTGGTGATATATTTGACCATATGTATGTGTTCAGTATAACATTAATTTCCATGAATGTGACAATGCTTCCTTATTGATAATCCTAATgatgtacatgttttttttgtttgcttttttgcttttctttgtgtAACTATGGCTGAAATGTAAAGAATAAGTATTGCACAACTCATCTATAGGGAAAGATTTTGTGAATTCAAATGGATTAGGTTTGAAGAGAAACTGCACTAAGCTTTAGGTTATATAAATCCCAAATAAATAATGACAGACAAATAAGTGATTGATTTCTTTAAACATATGATGACACATGTCCAAATGACCGGGTGAGAAAATGACATTATTTTCAACTCATGAAGCGCATACCTTTCGATGCCAACAAGGGTCTTAATGTTTGAGACAAATGAGAGTCCAGGCTTGTCCTCCCTGTCCAATCATTTTTACTTTAGAGAACGGTTTCTGAGTTTTTAAGAGCACAGCAGGTTCCTCACATTTGGCCATAATTTGATATGAGATAATATTTGAAGTAACGGTCCAAACATGGCTCTCTAATGTTTGAGGATGAAGATTGGAGTTTAGGTTTGTCTTCCAGTTTGCCAATCgagttggaatttttttttttttttttatatatataaacgtTTCTTATCCTGTATGTTCCTCTGTAAACTTCTCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263331 lncRNA upstream 58305 15169606 ~ 15171642 (+) True G193957
TU263319 lncRNA upstream 70278 15158382 ~ 15159669 (+) True G193947
XR_005637098.1 lncRNA upstream 86352 15137628 ~ 15143595 (+) True LOC120547672
XR_005637099.1 lncRNA upstream 86352 15137635 ~ 15143595 (+) False LOC120547672
XR_005637195.1 lncRNA upstream 100812 15126807 ~ 15129135 (+) True LOC120548564
TU263554 lncRNA downstream 568293 15802081 ~ 15803490 (+) False LOC120548468
TU263562 lncRNA downstream 587237 15821025 ~ 15823765 (+) True G194119
TU263563 lncRNA downstream 623336 15857124 ~ 15857376 (+) True G194120
TU263570 lncRNA downstream 679007 15912795 ~ 16129650 (+) True lrmda
TU263575 lncRNA downstream 914565 16148353 ~ 16156796 (+) True G194128
XM_039783184.1 mRNA upstream 124229 15104804 ~ 15105718 (+) True LOC120547654
XM_039784215.1 mRNA upstream 130964 15095768 ~ 15098983 (+) True LOC120548156
XM_039784611.1 mRNA upstream 151986 15076603 ~ 15077961 (+) False sfr1
XM_039784612.1 mRNA upstream 151988 15076603 ~ 15077959 (+) True sfr1
XM_039784928.1 mRNA upstream 189568 15020171 ~ 15040379 (+) False slka
XM_039784302.1 mRNA downstream 15412 15249200 ~ 15337542 (+) True LOC120548216
XM_039784300.1 mRNA downstream 19462 15253250 ~ 15337542 (+) False LOC120548216
XM_039784303.1 mRNA downstream 106339 15340127 ~ 15342013 (+) True LOC120548217
XM_039783244.1 mRNA downstream 391529 15625317 ~ 15632128 (+) False plek
XM_039783242.1 mRNA downstream 391541 15625329 ~ 15632128 (+) False plek
TU263049 other upstream 1153490 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 2858677 12351324 ~ 12371270 (+) False LOC120548560
TU263682 other downstream 1119403 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 1655612 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 3335195 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 3447201 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 3610642 18844430 ~ 18850903 (+) True G194908

Expression Profile