RNA id: TU263575


Basic Information

Item Value
RNA id TU263575
length 4892
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G194128
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16148353 ~ 16156796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccctctaaaatgttagcataaaatggaaatgctaAAGTATGTTAGTAAGTAAATATGTAAAGAACAAGTTCTTTGAATACCTAAGTACAGTTATTGAGTAAATGTTCTTAGTCTCAGGCATAACAAGTGGTAGAGAGAGTACAACAATAGAGGAAAAATTTCTTTGTAGTTGAAATAAAAAGAGGAGAGTTTCCAGGTTTAGAACACAAATACATCCATTTTAATTTgagaaaatacaaaaagaaaCCATGTACAATCTATGTACAACCTTTTTGTACAAGACAGTATATTTATCAGCAGATTATATTTGACAGAGTCAGGTAGATCAACTCAGCACCATCAAATAATCCATGTATCCATCATATCTAGAACACATCCAAACTAATTAGACTGCTTTGTCAAACTCCTGTTTGCTGCAATGATGATGTGCCAACAAATCCTATCTGTGATACGCAAGAACAATGTCCTGAATTCTTCCTGAACTGATAGGCAGCCAAAAGTAATAAACAAAAATtgcaacttttcttttttttttttttaaacaaaaaaattgctGAATGCAATTTTAATGTATTGTTAAGACTTGAGACCCACCTCCCATCCCCATAAGTTTTATATGTTCTATTATATCTAGTACAATTCCCAGCAAATAAGTTATTATATCCATCCTTTACAGCAAAAAATAGATTAACAAAAATAATGCAACATACTGTAACAGTAACGTATGACGTATCATAGTCTTTGTTTTGTTCAGTAGACAACAACACATCTGATGTTACAGGCATGTGCCTCTATGTGCATCTTTCAGTCATCCATATGCGCAGACGATATGTGTGGTATGATGACCGGGGCTTCCATCTGCCCCAGCTGTCTCTCTGAATGCCACTTTTCGCTATAGTGGGACTTAATATGGGCCCTCCTCTTGACCTTCTACATTGCCTGGCACTATACTTGCATGGAGGCATTAATGGCTTGGATGTTCTCCATGCAAGTACATTACACCATTCTCATAGTGGAAAACACTTGGACTCAGCTCCCTCAAAGCGAGCTTGTGTCCCAGAATGACTGAAGGATGCTTGCTTAACTAAACTCTTCATGGCACTTCAAAAAACACTCTAAAAAACTTTAGAGGTATACAATGCAAAGACCTAAAACATCTAACAGAGACATATGACAAGGTGTAGGAAGGAGATAAATCTCAGTCCAGTGTTGTGAATAATGCCAGCCTGAATGAGTCGCACAATGAGGGTTCAGGTAGAAAAAGCACAGTAATCAAGGATAAGGAAAACAAATGGTGCATTACTTTGTGAGTTTATGTTAATGCCAGTTTGCAGCATGTACCGTTTTATTTCTGAACAATGCTATGTTTAAGTACCCTAATAAAATACTCTGTAAACAAATAAGAAGCAGTTGTGACAGATTGTGACAGATGACAAGCTGACAAAATGGAATGTAAACCCTGTAATAACACAAAGTAATAAAAACAGGGAAATTAAGGATGTTCTCTCTTTTGATAACCTCTGCTGAATTGGTGCTACCTTCTTCTTTGTAATGGCTGATAAACCAGATCAAATTCCGCCTGACTTTTCCTACTTAATATTCTCCCACAAGAAACCAGGATATTTCATTTTCaagatttgtctttttttcaacataacaaTCAGTTTGTCGATTCTATGTATAATAAGTTAATGCCATTATCAAATATTAATAGTTCCTTAGTGTTCAGGCTAGCAAGTTGCTATTACCAACCCAATTATACATACATTTCACTCACATGTTTTCTGAAAAGAAATCTATTTGCTACAAAGTGTGACAACGATGTAATCACAGTTCAAAAGTTCACTTCAGGACAATGTGTATGAGGCTTCAGTATATTTGCAACACACCCAATAGACGGACATTGAAGCTCAGatcattttgtttgaaaaagaaatgtggTTTATATAATGGGTTGAATTTACACAAACATATTTAgcacaatattattatattccaatttttttttcacttaatTTTTCTTTATAGCCTATAGAGAAGAATCACTGCAATAAACTACTGTGTTTCCCTGTCATATTTGAAATCTGATTATGTGGAAAACACCAGCACACTGTGCTTAGGTGTAAAATACACACTCTTCCTCCACACTAGAGACCTAATTTAGGTCAAACAGAACTAATGGTTATTCAGTTCCGGcctgcacacagagagagcgaCTCTATGATCTTCACGTTATTAATACCACTCTGTTCTGCTCTCCACCTAAATACACCATTTACCATCCCATAACTCCTTTTCACCTATCTTTCCGTCTGCATGTTTGCAGCTAGGGATGCTTAGCAGTAGACACATTATTTAATAGATATGGCTCATCTGTGCATCTGAGGAGTCAGATGAGCCTTAATCTATTTCTACAAGCACCCAACAGTCTCTATAGCTGAGCTGCCAGGCTGAAGACGGTAGTTTCACAATACAAGCTAGTCTAAGCTTTATTGGCTCCAGAGTGATGCAGTTGTTAAAGAGGGCACAGAGGGGTGATATAGTCCAAGACAAAATCCTTTGATATGTAGGTAAAAGATTATTTGAGTCTTTTAATCTCCCGTAGTACTTTTCACTTGGTTCTTGTCTAGAAAAATAAGTACAAATTGATTATGTTTATGGATACAAAATAATTATGTTTAAATGTATGAATTCAACTACATATTTGCATGAAGTTTATGTATTAGGAGTACAAGGCTAACGCCTCAATCCTCCATCACTATCCCAGCTGGATTTGGATCTAACAGTGCCTAAACGTGCAAAACACACACTAATGTTGAACACAGGCTAGCATAAAGAACACTGGTTCCTCTGCAGTATCCTTATTAGCAGTCTGTGTGCAGTGTTGCATTTCCACCCATCTATGTTTGAGCATTTCCCCATGCGAGAGGACCGAACATAGCAGCTTAACTCCTGAGAGTTTTGAGGCGTGTGACATCTGGATTGGCAACAGAGAACATCCAAGCTCTTTACTGCCTCTGTGCCAACCCTGTGCCAGGCAGTTGTTTTGATCAGAGGAGGACCCATTGAAGCCCACTTTTATGCAATATGTGGCATTTCTTTCCTCAGACATGTACTTTTTGTAACAGACGAAACATTCAGAAAATACACCACTCTTTGTGATCCCAAATTCTGCCGCAGATATCACGGCAAAGCGTCAACGGTGGACACGCAGCTGCTGTTCGTGTTAGCTTGGCTCAATCATAGTTTGGGATTTTGGTCTGATTTTTGATGCAACATAATAATTTTGTTTGTAGATCCAAACCCTCTAGACTCGTCTACTCTTTTTTGTCTACCATGACTTTCATTTTTAGAGCAAAGTTTCCACATGCTGTTCTTTTAAAGGTGCACCATCACATACACGGCAATGGAGGAGATGAGACCACTGatcagggcacacacacacacacacacacagacacagcgtGCACATAACGTAAATGCTCCTGAACACATGAAGGACAAGGGTAGTTGTTTTTCATCCTTCTCATGTACGCAGGTTGATCAACCGCACTGTATCTGTTATAGAAGGGGGCTCAGGCACATATCATGCGATAGGCGCTTCAAACAGAGTCACAGGCTTTATGATCTGACGTATCAGCAGATACATACAGCAGGTACAGGGTTCTCTTTCCGCTAGTATACGCCAACACTGCACCATTCTTCGAGTTTTTAAACTACTGTTATGAAAGATTACTTTGTTCAGCAGGAGTGGAATGCTCTCACTCAACATGATGAGTCAACAGTGAAGTAGCAAACCTTAAGCAATGACATGATGTAAAACAACCCAAGAACAAGACTAGTATGCTTTCGAAGCCAAGcagccctccctccctcttcctttcttccttccttcatcTCCTCAGAGACATTTTATTGGAGGGGGATCTGATGGTTCCAGTTGTTCTGTCAAAAGAAACTTGTTCAGTTTTAGTGCAAATAGAACAGAAGCCAGGGGATATGAAGTTGATGAATCCAGCTGGTTTGACGTGACGCATCTGGGCGGATCTTTGGGAGATGATATGAACATGTTATCGCTGCAACCCTCATCCTCCAATAACCAGTCACCTTAGCAATGGGGTCTGGTCACACGAAGAGGTGAACTATTGCAAAGAATTACAGGAAGTACTCTTTTTTTCAattcttaaaataaatccaaaaagTGCTAGGGGGAAGGGGCTGTACAATCCTTATTTGATTGTCATTATGTACATCACTATGGatacattaataaataaaactatgtcCAAGAGCATGGAAGTAACATTAAAGGTATACACAAGGGGAGGTCCCATCTAGTTTGGGTTTCTGTCCAACCCTTGATTAGAAGAATGAGTGAAGAGAAATGTGTCAGTCTTCAACATccctgtcatcatcatcatcatcatcatcatcatcatcaatcctCCATGGGTGATCTCCCATCTCTTTTGAAAGAGCATACAGATGCCTGGTGAGTCAGCAAGAAAACCCTGTGTTCAGCATTCATCTTCAActtctctgattggtggaatcAGACTACTAGTGGATTTGTATTGGTTGACTTGGTTGGCCATGTGAGTGCTCATGGGCTTGATCTGAATATTCCGTGGGTAGGCATTTTCTGTTTCATCTGTAAACCATTTCTTTTCTGTTTGTCGCGGGCCTCCCGGGTCTTACTGTTGCGGTTCTGCCGGTTGGAGGGCGGGATGGAGTGGACAGAGGAGCTCTTTTTGCTGGAGGAATGGGAGGAGTGGGAAGAGTGGGACAAGTTTGTCCGGGACTGGCCTGCATTGTGGTCGAACTGCATGAGGCAGAATATCAGGTCTGTGGGCACGAGCTCAAACTCATATGGTGGGTTCGTGATCACAT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263570 lncRNA upstream 18703 15912795 ~ 16129650 (+) True lrmda
TU263563 lncRNA upstream 290977 15857124 ~ 15857376 (+) True G194120
TU263562 lncRNA upstream 324588 15821025 ~ 15823765 (+) True G194119
TU263554 lncRNA upstream 344863 15802081 ~ 15803490 (+) False LOC120548468
TU263343 lncRNA upstream 914565 15229947 ~ 15233788 (+) False zgc:91976
TU263679 lncRNA downstream 180504 16337300 ~ 16340067 (+) True G194183
XR_005637136.1 lncRNA downstream 201099 16357895 ~ 16359362 (+) True LOC120548058
TU263756 lncRNA downstream 390685 16547481 ~ 16553436 (+) True G194231
TU263754 lncRNA downstream 395550 16552346 ~ 16553488 (+) False G194231
TU263783 lncRNA downstream 434679 16591475 ~ 16605060 (+) True G194254
XM_039784726.1 mRNA upstream 18686 15912762 ~ 16129667 (+) False lrmda
XM_039783245.1 mRNA upstream 333767 15806373 ~ 15814586 (+) True vdac2
XM_039784732.1 mRNA upstream 344838 15794970 ~ 15803515 (+) True LOC120548468
XM_039783239.1 mRNA upstream 354272 15790076 ~ 15794081 (+) True LOC120547687
XM_039784711.1 mRNA downstream 205957 16362753 ~ 16396088 (+) True zcchc24
XM_039784710.1 mRNA downstream 205957 16362753 ~ 16391951 (+) False zcchc24
XM_039783431.1 mRNA downstream 405101 16561897 ~ 16566248 (+) True ppa1b
XM_039783433.1 mRNA downstream 410476 16567272 ~ 16571799 (+) True sar1ab
XM_039782950.1 mRNA downstream 415442 16572238 ~ 16576237 (+) True tysnd1
TU263049 other upstream 2071896 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 3777083 12351324 ~ 12371270 (+) False LOC120548560
TU263682 other downstream 196395 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 732604 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 2412187 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 2524193 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 2687634 18844430 ~ 18850903 (+) True G194908

Expression Profile