RNA id: XM_039782950.1


Basic Information

Item Value
RNA id XM_039782950.1
length 2190
RNA type mRNA
GC content 0.47
exon number 4
gene id tysnd1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16572238 ~ 16576237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGAAGCTACACGACACGATTCCGAAATTCGCGTTATTAAACATTTCTGTGTCGCGATATAACGCTAGTTTAAACTCGTCTGTCTGCTATACCTTAAGGGTTTGTTTTCGTGTCTCACCACTACTCTGTGAAGCTGTTTTTCAACAGTTTTCCCAGTGTCTTTAAGTTGCTAAACGTTATACGGTTCACATGGAGGTAAAGGAGGTAGAGAAGTATTGCTGTGTTGTCAAGGTATTTGAGGCTTTTTCAGCAAAGAAACCCGTGAGCTGCAGCGGAGTTATCATCCATCCTCAAACGGGAACAGTGATATGCACTGGCGTTCCGTTTTCCCGTTTTACCACCGAGAAAGAGCCCCTCTCAGCAGCAGACAGGTTCCTGTCACCGCACAGCTTCAGTGAAAAACTTCAAATCCGTGTCAGCTTTTCTACTGAGCGATATTTGGACTCCAACCAGTCTGCACAGGGAGAAGCATCCTCACCCTCCAGAAGCAAAACAACAGTTCAGCAGGAAGTTGCAGCTGAGTTGCTGATGCTGGTGAACTGCCTGGAGTTCAAACAGACTTTCCAGGCAGTTTTCCAAGAGGCTGACCAGTGGCGTTTCCATGGTGATGAAGAGGATGAGGGGCTGATCAGAGATGCCCagttcctcagctggttcgctGTACTCAAGGCAAGTGTGGCAGACAGCAGCAGGAAAGCAGGGACTATACCCTGGCGGAGCAGCTCATCTCTCCAGAAAGGCTGCCCTGTTGTTGCATGTGGCTCGCCTTTTGGCTCCCTCTGCTTAGATCTCTTCATCAGCACCCTCAGCCGGGGCATCATCAGCAACCTAACCGGAGAGGAGAACGCTGTCATCCTCACAGACGCTCGGTGCTTGCCAGGCACGGAAGGTGGAGGGTTGTTTGCGGTTAAAAGCAAAGGCGATGTGCATCTGGTTGGACTGATCGTGTCTCCATTTGGATGGAAGGCGAACGAGTGGATAGGCCTCACTCTAGTCTGCTCCATCCACTTGATCTTCAGGAACATCATCCACTGCATGAGAGCTCAAGATCCACTTTGTGATGTTCGGCTCTATCCGGGAGAGGCCGACCTCCTCATGTCCACCGCAGCCCATGAGTCAAGAGCTGTAAAACGCCCCACTGTGTGCTTTGTCGACAGTGGACGGTTCTGGGGCTCAGGGGTTGTTGTTGCCTCTCAGCTGGTTGTGACCTGTCGCCACGTTGTCAATGGGAAGTCAACAGTCACCCTGAAGTTCCATCACAGGGACAGAGTCCATGATGCAGTGGGTGATGTGCTGTTTTCCACTAAAGCCTCTTCACCCTATGATTTGGCTTTGGTGCAGCTAAGAGAATCCGCCACAGATGCTGTGGTCCCTCGAATGGCTCAGAGTTATAATCCAGGTGAATCTGTAGTTGTGGTGGGATATGGTGGCTTGGGTCGGAGATGTGGTCCGTCTCTGACCTGCGGTGTCCTCTCCAAAGCCATAAGCTTGAATGACCAGCCTGTCATGCTTCAGACCACTTGTGCAGTACAAGCAGGGACCAGCGGAGGTGCTGTGGTGCGAACACGCTCAGGAGAGCTGCTGGGTATCGTGTCCAGCAACACAAGGGACTTGGCTGCCAAAGTGACCTACCCGCACCTCAACTTTAGCATCCCAGTGACTGTTTTCCAGAGATTGCTGCAGCACTTTCACCAGACAAGGGATGCTAATGTGTTCAGGGTGTTGGACACCACAGAAAAAGAAGTCAGCACGGTGTGGAGGCTACAGGGTGCACAAAGCAAACTATAACCGAGGAACCCTGAACCTTGAGATATGCTAGAGGAAAAAAGATTGGTTTGTCAAATCAATATGGATTATATGCAAAATCATATTATGTAATCAAATTGatatgtgtatttctttttaaacaaaactgGTATTCTCAAAGATATAACTTAATGTTTCATACCTTAATTTGTTACAAAGACAAGTCACAGATCTGAAGGAGTAAATGCAACTAAAACAAGAATCATTCATTCCTAATGTTGACACACTCAACCCAGAATCATGCAGTAAACTGTGAAATATGTATAAGACCACTTGCTGTTAACAGACAAGTTAAAGTTAATTTAATACCTGCcaaaattgttttattgtagtgtaatgtacagtaatgTAATCATattaataaagtattttttctGGTGACA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K23012 TYSND1; peroxisomal leader peptide-processing protease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263754 lncRNA upstream 18750 16552346 ~ 16553488 (+) False G194231
TU263756 lncRNA upstream 18802 16547481 ~ 16553436 (+) True G194231
XR_005637136.1 lncRNA upstream 212876 16357895 ~ 16359362 (+) True LOC120548058
TU263679 lncRNA upstream 232171 16337300 ~ 16340067 (+) True G194183
TU263575 lncRNA upstream 415442 16148353 ~ 16156796 (+) True G194128
TU263783 lncRNA downstream 15238 16591475 ~ 16605060 (+) True G194254
TU263786 lncRNA downstream 32237 16608474 ~ 16613843 (+) True G194257
TU263791 lncRNA downstream 40573 16616810 ~ 16618592 (+) True G194261
TU263790 lncRNA downstream 46710 16622947 ~ 16625097 (+) False trmt2b
TU263818 lncRNA downstream 80341 16656578 ~ 16659077 (+) False hif1an
XM_039783433.1 mRNA upstream 439 16567272 ~ 16571799 (+) True sar1ab
XM_039783431.1 mRNA upstream 5990 16561897 ~ 16566248 (+) True ppa1b
XM_039784711.1 mRNA upstream 176150 16362753 ~ 16396088 (+) True zcchc24
XM_039784710.1 mRNA upstream 180287 16362753 ~ 16391951 (+) False zcchc24
XM_039784726.1 mRNA upstream 442571 15912762 ~ 16129667 (+) False lrmda
XM_039783255.1 mRNA downstream 35040 16611277 ~ 16612689 (+) True LOC120547697
XM_039783248.1 mRNA downstream 43787 16620024 ~ 16623269 (+) True trmt2b
XM_039783254.1 mRNA downstream 52335 16628572 ~ 16636821 (+) True scdb
XM_039783253.1 mRNA downstream 63465 16639702 ~ 16645139 (+) True wnt8b
XM_039784733.1 mRNA downstream 73631 16649868 ~ 16659075 (+) True hif1an
TU263682 other upstream 218407 16353191 ~ 16353831 (+) True G194185
TU263049 other upstream 2495781 14074642 ~ 14076457 (+) True G193730
XR_005637192.1 other upstream 4200968 12351325 ~ 12371270 (+) False LOC120548560
TU263878 other downstream 313163 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 1992746 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 2104752 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 2268193 18844430 ~ 18850903 (+) True G194908
TU264838 other downstream 2549983 19126220 ~ 19131941 (+) True G195036

Expression Profile