RNA id: XR_005637136.1


Basic Information

Item Value
RNA id XR_005637136.1
length 431
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC120548058
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16357895 ~ 16359362 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAATACACATACTAACACAAACAAAAGTTCCCGTTTTGGACTGTGAGCTAGGCCTGTAGAtctgttaaagaaaaacaagCTAGCGTTAGTTAAACCTCCGAACCCAATTTACATAATGTGTCTAGATCCGCCGTGTCAACTCAACCCAGCACTTTGCtgtaacttagctagctagctagctaacgctatcGCTTGCTGACCAAAAATAGCCGAACAAAAGCTACAATCTAAGCAGAGCATTTTGTGGCCTTAAATGGTTGAGCTAAAGGCACTGGCCCTGCAGACTGGACCAGAGTTCATGGTGAGCATCGTAGACCTCCTCACTGCTGGGCCTGTGCCTGGATCACCGAGCTCGTTAGATGTTCGCTGCTCATGCTAAGCCCTTGAAACAGTAGTTGGTCAATATtggataataaaatataatacatta

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263679 lncRNA upstream 17828 16337300 ~ 16340067 (+) True G194183
TU263575 lncRNA upstream 201099 16148353 ~ 16156796 (+) True G194128
TU263570 lncRNA upstream 228245 15912795 ~ 16129650 (+) True lrmda
TU263563 lncRNA upstream 500519 15857124 ~ 15857376 (+) True G194120
TU263562 lncRNA upstream 534130 15821025 ~ 15823765 (+) True G194119
TU263756 lncRNA downstream 188119 16547481 ~ 16553436 (+) True G194231
TU263754 lncRNA downstream 192984 16552346 ~ 16553488 (+) False G194231
TU263783 lncRNA downstream 232113 16591475 ~ 16605060 (+) True G194254
TU263786 lncRNA downstream 249112 16608474 ~ 16613843 (+) True G194257
TU263791 lncRNA downstream 257448 16616810 ~ 16618592 (+) True G194261
XM_039784726.1 mRNA upstream 228228 15912762 ~ 16129667 (+) False lrmda
XM_039783245.1 mRNA upstream 543309 15806373 ~ 15814586 (+) True vdac2
XM_039784732.1 mRNA upstream 554380 15794970 ~ 15803515 (+) True LOC120548468
XM_039783240.1 mRNA upstream 563814 15790076 ~ 15794081 (+) False LOC120547687
XM_039784711.1 mRNA downstream 3391 16362753 ~ 16396088 (+) True zcchc24
XM_039784710.1 mRNA downstream 3391 16362753 ~ 16391951 (+) False zcchc24
XM_039783431.1 mRNA downstream 202535 16561897 ~ 16566248 (+) True ppa1b
XM_039783433.1 mRNA downstream 207910 16567272 ~ 16571799 (+) True sar1ab
XM_039782950.1 mRNA downstream 212876 16572238 ~ 16576237 (+) True tysnd1
TU263682 other upstream 4064 16353191 ~ 16353831 (+) True G194185
TU263049 other upstream 2281438 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 3986625 12351324 ~ 12371270 (+) False LOC120548560
TU263878 other downstream 530038 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 2209621 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 2321627 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 2485068 18844430 ~ 18850903 (+) True G194908
TU264838 other downstream 2766858 19126220 ~ 19131941 (+) True G195036

Expression Profile