RNA id: XM_039784710.1


Basic Information

Item Value
RNA id XM_039784710.1
length 1366
RNA type mRNA
GC content 0.46
exon number 4
gene id zcchc24
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16362753 ~ 16396088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTCTCTCTGCCCCGCTGCAATAAAGGCAGATAGCGGTCCATGGGGAGCAGGGGGAAACTTTTTATACTGACATGTTAGCGCAATGACTTTTGAGTAACATCTAACTGGGACGAGGCTCCCGGCGTGAGGAGGACAGGGCCCTTTACGGGAAGAAAAAAGGAGCACTTGCCATCTGCCGGGGAACTGGAACGAAAAACAAGACGGCAAAAGAGTTAAGAGCAGTCCAAGATTCAGCGGTGGAAAATCCAGTTTAGCCATTTGAATTGAAAGATGAGCTTGTTGTCTGCCATAGACACGAGTGCCTCCGTGTACCAGCCTGCACAGCTTCTGAACTGGGTCTATCTCTCCTTACAAGACCCCCACCAGACCAGCGCTTTTGACGCATTCAGACCCGAATCCAACTCTTCCCACCCGGATCACAGTTTCAGCAAGACTCCCGCAGCAGCGGATTTGAGCTCTTCCCTGAGCTCAAACTATCTCAACAACTTTTTTCAGCTGCAGCGGAATGAGGCCTTAAACAACAACGTGTATAAGAACGTGTCACCCTATGGCTCCCTTAACAACATCGTGGATGGACTCAACACCCTGACGGACCATTTCTCAGACCTTTCCCTTTCTTCAGAGCcaagaaaaccaaacaaaagaCCCCCACCCAACTACTTATGCCACTTGTGCTTCAACAAGGGCCATTACATCAAGGACTGCCCTCAGGCCAGACCCAAAGGTGAAGGACTGACACCTTACCAGGGGAAGAAGAGATGCTTCGGAGAGTATAAGTGCCCCAAATGTAAGAGGAAGTGGATGAGTGGCAACTCCTGGGCCAACATGGGACAAGAATGTATCAAATGCCACATCAACGTCTATCCACACAAACAGCGCCCTTTAGAGAAGCCGGATGGCCTGGATGTTTCTGACCAGAGCAAGGAGCACCCGCAACACCTGTGCGAGAAATGTAAAGTCCTGGGCTACTACTGCCGCCGTGTGCAATAATCATCTTTATTCAGTCAGAGTGCAACGTTTGTGTCCCAAGTTCTATTGCTCATCCTCCATCAAGGCTGTTAACTTTCTCCTTTCACATCCAGGTTTCCCTAATCCCTgcgtagggatgcaccgatctgatacgGATATTAGATACTGACTCAAATAGTTGATCAGGTTTCGGGGAAAATTGCGCCAATCTTTTCAATTCAGTTCTATGTTTATACACCAATTTTGACCAATATGTTGCTGCATTCAAAAGGTTTACACTTTAATTGTAATTGCTGTCAACTTTATAGATATTTTTACCAACTTGCTGGTGCacgatttataaaaaaaaaaaaaggaaattaaaaacaGTAAATGTATCTATTTATTTTGCTTTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637136.1 lncRNA upstream 3391 16357895 ~ 16359362 (+) True LOC120548058
TU263679 lncRNA upstream 22686 16337300 ~ 16340067 (+) True G194183
TU263575 lncRNA upstream 205957 16148353 ~ 16156796 (+) True G194128
TU263570 lncRNA upstream 233103 15912795 ~ 16129650 (+) True lrmda
TU263563 lncRNA upstream 505377 15857124 ~ 15857376 (+) True G194120
TU263756 lncRNA downstream 155530 16547481 ~ 16553436 (+) True G194231
TU263754 lncRNA downstream 160395 16552346 ~ 16553488 (+) False G194231
TU263783 lncRNA downstream 199524 16591475 ~ 16605060 (+) True G194254
TU263786 lncRNA downstream 216523 16608474 ~ 16613843 (+) True G194257
TU263791 lncRNA downstream 224859 16616810 ~ 16618592 (+) True G194261
XM_039784726.1 mRNA upstream 233086 15912762 ~ 16129667 (+) False lrmda
XM_039783245.1 mRNA upstream 548167 15806373 ~ 15814586 (+) True vdac2
XM_039784732.1 mRNA upstream 559238 15794970 ~ 15803515 (+) True LOC120548468
XM_039783240.1 mRNA upstream 568672 15790076 ~ 15794081 (+) False LOC120547687
XM_039783431.1 mRNA downstream 169946 16561897 ~ 16566248 (+) True ppa1b
XM_039783433.1 mRNA downstream 175321 16567272 ~ 16571799 (+) True sar1ab
XM_039782950.1 mRNA downstream 180287 16572238 ~ 16576237 (+) True tysnd1
XM_039783255.1 mRNA downstream 219326 16611277 ~ 16612689 (+) True LOC120547697
XM_039783248.1 mRNA downstream 228073 16620024 ~ 16623269 (+) True trmt2b
TU263682 other upstream 8922 16353191 ~ 16353831 (+) True G194185
TU263049 other upstream 2286296 14074642 ~ 14076457 (+) True G193730
XR_005637192.1 other upstream 3991483 12351325 ~ 12371270 (+) False LOC120548560
TU263878 other downstream 497449 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 2177032 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 2289038 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 2452479 18844430 ~ 18850903 (+) True G194908
TU264838 other downstream 2734269 19126220 ~ 19131941 (+) True G195036

Expression Profile