RNA id: XM_039784733.1


Basic Information

Item Value
RNA id XM_039784733.1
length 3402
RNA type mRNA
GC content 0.42
exon number 8
gene id hif1an
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16649868 ~ 16659077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTTGTGTCGTTTGTTTTCTGGCTGTAAACACAGCCTACACACGGAACAGAGCCGGAGACTATGGGCTCCTGCAGGAAGGTACATCGCTGTTAATGGGGAAACTTGTATGATAACGTCCATTAGTCCCGCGGCTGACTCTTTAGCCTAGCAGGGAGAGTCCGGAAGAAAAGCCAGTGTCTGGTTGTTTCACTGTAAGGAGGACGGAGACAGCCAATCCGCGCTTGTCGGCGACCATGGCATCGGCGACCGTTGTGGAGGCTGATCCGTCGGCAAACGAAGGCGGCGCTGCTTTTACTGGCGTCCCGAACTGGGACTGGGATGAGTCTCAGCTCCGAAAATATTCTTTCCCAACCAAGCCCATTCCGAGACTGTCTCATACGGACCCCAGAGCAGAGATGTTAATAAGCAACGAGGAACCAGTggttttaacagacacaaacCTTGTGTATCCAGCTCTCAAATGGGACATTGCATATCTGCAGGAGAACATTGGAAATGGAGACTTTTCTGTTTACACTGCAGAAAACCACAAATTCCTCTACTATGATGAGaagaaaatggcaaattttGAGAACTTTGTCCCCAAGTCACAACGAATGGAAATGAAATTCTCTGAATTTGTGGATAAAATGCATTTAATGGAGGAAaaaggtggagaggagagGGTATATTTGCAGCAGACCCTGAATGACACGGTAGGGAAGAAGATTGTTGTTGACTTCCTTGGTTTCAACTGGAACTGGATCAACAAGCAGCAAGCCAAGAGAAACTGGGGACAGCTGACATCCAACCTGCTGCTCATAGGCATGGAGGgcaATGTGACACCAGCACATTACGACGAGCAGCAGAACTTCTTTGCACAGATCAAAGGCCATAAGAGGTGCATCCTCTTCCCTCCAGACCAGTTTGAGTGTCTCTATCCATACCCTGTGCACCACCCCTGTGACAGACAGAGCCAAgtTGATTTTGATCATCCTGATTTTAAGACGTTTCccaattttaaaaatgttgttgGCTATGAGGCTGTTGTGGGCCCAGGAGATGTGCTCTACATCCCGATGTATTGTGCAGGAGGGAttacaaacaaaagaacaaGACCCAAATCCAGCAGTACATTTTTGGGGAAGCTGTACCTACTTAGAAGCCACTCTGTGCCCTCGGCAAGCAGATCAGCGCGATCTTTGAGCGCATTGTTTGCCAAGTCTTCCCATAACGCAAGAGGTGCCTCCACACCCAAGAGGATAGAGTACCCCCTGAGGGCTCACCAGAAGGTGGCCATCATGAGAAATATTGAGAAAATGCTGGGAGAAGCACTTGGAGATCCACATGAGgTTGGACCTTTACTGAAAACGATGATCAAGGGGCGATATGACCATGATCTCGGTTAGAGCGCCACTCTTAAAAGAGTGACCTGGACTGCGGTGCAATCTTTTTGCCGCGTGAAAGTGAGACTGCTGCATGCGTAATGCGCATTCTGGCTTTTTTAAGCATACGTATCACTGCACGGCAATAAGCAGCCACCTGAAAACCATTCTGCTTCAGTTGTCTCCGAGTGCCATGGTCATTGCAAATACATCTATCACAGAAGAAACATTGGACTAACTCAGTGGAATTCCACCTACTTGAagaagtctttttaaaaaaaatcttttgtctTTGAAAAGAAGGCCTCATTTGGATTAAGTCTAGATATATTTATGTAAATCAGTGTTCTCTCAACATTCTTAATTCAAGCTAGTGGGTTTTTGGGTGCATGCAAATGAAGTTGTAAGATCGGTACCTTTGGGACAACCTCAATATTTTGACCACTAATGGATGAGTCAAAGGGtattacatatacagtacacatcaGTTAGATACTTTCTTATATACATGTTCTAACACAGTTATGGATTGATTCCTTAGTGTGGAGTGATCATATTGTATTCTCCATCTTTAGCACTAATACAGCTTTAAAACTGTTTTGGTTCATACCTCTAAAGTTGACAGGTTTTTTAAGGGTCTTCTATAAATATATCCACATAATCTGCATTATCTCCACTCCTACTTACATGGTTTTGGGGAGTGAGCAGCAAGAATTTTCTGTTGCAAAGAAGACAGCATAGGCACGGTAATAAAACATAAGTACAGTGATTTTAAAACTGATGAAATATGTGTGGGTGGGGAAAAAAGGGGGCTCGTATATTCAGCTGAAGGAGTATGTGACTGCTTGCAGCTAAACTGTTTACCTGAGCGACGCTGCTTTGTGTTTATACATGCTCTTGCTTGTTTGATTTGTTTGACTTTATTGAATGTGCTATTCTGCGTACCAGTAATGAGGGTAAGATGAGGGGCACTGGAAATAAATGACATACTGCAATTTTAGTTGCAAATACAGGtaacttaaataaataaaataaaatacagtaagCCACTGTTGTTGGGAAGATTTTTCAGAGGAATTACCAGTGATGTTTTCTTAGGAATATGATGGTTAAAACTGTAAAAGTGGTTAACTTGAACTGCTTAAATGATAGATTTATGTAAAAATGTTATCAATGCACTGAACTAGCAGGACCATCTGCTGGGATGTAGCTTATGTACCAGCCATTGCAGCGCAACACAATGTACCATCTAGTGGTGAAGTTGTATAGTTACCTGGTCCATGCACTATACTGCTGCAATACAAATATTCAACGTGCTATATTGAACGCAGCAGATCTGGGATGAAATGACAAAAGTCTAATTTCAGTTGGAAACGTGTACTTGGTCAGTGATCCTCAGACATGCACTTATTTTTACTCACATGCAGCCATATTTTGAAGACCTTAAAGAGAGCAAGATGGCGGTTTCTGTGCACATTTAAAGTGCTCTCCTGAACTGttgtaaaaaatatacattGAACAAAAAGAGGATAATTTCACGTTGTGCTGTATGTGCCAAACCAACATACAAAGCAGTAGATGGGTATCTGTATTCAGAAAGGAATATCCATGCACTAAATTTACCAGGAATACACGTTCAGGTGTTTTGTTATGATTAACCTTTAGATTGTTGATAACGTGCATATCTATTTCTTACAAATTGCACAATGATGGAACAGGGATACTTCCTCTGTAAAATAATGACATACCTGATGTGGGACTGATGTTTCATCTCTCTCTTAAATTGCTAGGTTAACCCTGTTTACTGTATGTGCCTTGTTTAAAAGCGGCATGGCACTAAATGTTGCAACAACTTgatttggaattttttttattttatggtcaaaatgttttcactctggCATTAAATCGCTTTAAAGGTAGGATTGACATGGTTCATAGCGATCAAGGCATGTTTTTATTGATGGATGCCTGTTTTCAACGTACAGTATGTGCTCTCCTTGTTCCTCTGATTAAAGTTTGTTTGCAAAGTTCTA

Function

GO: NA

KEGG:

id description
K18055 HIF1AN; hypoxia-inducible factor 1-alpha inhibitor (HIF hydroxylase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263790 lncRNA upstream 24771 16622947 ~ 16625097 (+) False trmt2b
TU263791 lncRNA upstream 31276 16616810 ~ 16618592 (+) True G194261
TU263786 lncRNA upstream 36025 16608474 ~ 16613843 (+) True G194257
TU263783 lncRNA upstream 44808 16591475 ~ 16605060 (+) True G194254
TU263754 lncRNA upstream 96380 16552346 ~ 16553488 (+) False G194231
TU263946 lncRNA downstream 379211 17038286 ~ 17039656 (+) True G194375
TU264038 lncRNA downstream 604847 17263922 ~ 17289530 (+) True G194445
TU264049 lncRNA downstream 641366 17300441 ~ 17302122 (+) True G194451
TU264073 lncRNA downstream 747800 17406875 ~ 17409080 (+) True G194469
TU264092 lncRNA downstream 772496 17431571 ~ 17431863 (+) True G194485
XM_039783253.1 mRNA upstream 4729 16639702 ~ 16645139 (+) True wnt8b
XM_039783254.1 mRNA upstream 13047 16628572 ~ 16636821 (+) True scdb
XM_039783248.1 mRNA upstream 26599 16620024 ~ 16623269 (+) True trmt2b
XM_039783255.1 mRNA upstream 37179 16611277 ~ 16612689 (+) True LOC120547697
XM_039782950.1 mRNA upstream 73631 16572238 ~ 16576237 (+) True tysnd1
XM_039784417.1 mRNA downstream 205517 16864592 ~ 16876004 (+) False cdhr1a
XM_039784416.1 mRNA downstream 205518 16864593 ~ 16877432 (+) True cdhr1a
XM_039784536.1 mRNA downstream 244300 16903375 ~ 16911055 (+) True rgra
XM_039784793.1 mRNA downstream 264226 16923301 ~ 16925934 (+) True slc18a3a
XM_039784792.1 mRNA downstream 267474 16926549 ~ 16934687 (+) True chata
TU263682 other upstream 296037 16353191 ~ 16353831 (+) True G194185
TU263049 other upstream 2573411 14074642 ~ 14076457 (+) True G193730
XR_005637192.1 other upstream 4278598 12351325 ~ 12371270 (+) False LOC120548560
TU263878 other downstream 230325 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 1909908 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 2021914 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 2185355 18844430 ~ 18850903 (+) True G194908
TU264838 other downstream 2467145 19126220 ~ 19131941 (+) True G195036

Expression Profile