slc18a3a (slc18a3,LOC102786515,LOC102201752,LOC105416362)


Basic Information

Item Value
gene id slc18a3a
gene name slc18a3,LOC102786515,LOC102201752,LOC105416362
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16923301 ~ 16925934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784793.1
CCTTACACGGCCGACAAAACCAGTCCGGTTGATGTGAAATGATGACTTAGCTCACAGCGTTACCTCTGACCGAAGACAGCCGGTAGCCGAAAGGATGCTGCAGACGGACCTAAAAAAGCGAGTGCGCTGATGGAGTTGGCACTGTGAGCTGGAGGTAAATCCCCAACCTGTAAGTGCTGCCCGGGACCAGCGCGTCACCTGAATGACGGGATATGAGACAATGAAGCAACTAGGGATGACGGCGATAAAACGAGTCCAAGTCACGGGAGTGGAAAAGCGCGTGCGATGACGGACGGCGCAAGGGACAGAGAAGAGGTAAAGCAGAGGGAAGTTATCTAGCTCATTAGTAGGGCTCCTGGTGCTGGaaaagaaaactaaataaaagacAGACCAGATGTGCCAAGTGCGCGTAATTCTATAAGCAAATCAACTGGGGGAAGCCGATTTTCATTCTCAAAAGACAAGACTTGAGCCAGAAATGGAAAACGTCATGGAGCCGGAGGGGACCACAGAGGGACAAGCCACTAATTTGGCACAATCTGCCGCCTCTAAACTGTCCCAGATAGGCGAAAGAACTAAACAACTGGGCTACATCCAAGACCCAGTTCGGCAGAAACAGGTTATTCTAGTAATAGTCTGTGTAGCGCTTTTGTTAGACAATATGCTTTACATGGTAATTGTGCCAATTATACCCGATTACCTTGCAGAGCTACAGAAAGCAGCGGATAAAGCCGAAGCCGTTGTACTGCAGACCAACTTCACTAACAGCACCATCCACAAAGCAAAGGGGAACTTCGACCTACAGATTGGTGTTCTTTTTGCCTCCAAGGCCATCCTGCAGCTCCTGGTGAACCCACTAAGTGGCACGTTTATAGACAGAGTGGGGTATGATATTCCACTCTTCATCGGTCTCAATGTCATGTTTCTCTCCACCCTTACTTTTGCCTTCGCTGAAAACTACGCGACTCTGTTCCTGGCGCGTAGCATCCAGGGCCTCGGCTCGGCTTTCGCGGACACTGCTGGGATCGCTCTGATcgcagacaggtacacagaagagaaagagaggagcaaAGCGCTGGGTATTGCCTTGGCTTTCATCTCTTTTGGAAGTCTTGTGGCGCCCCCCTTTGGGGGGGTCCTCTATCAGTTCGCAGGGAAGCGGGTGCCCTTCCTGATTCTGGCCTGTGTCTGCCTCATTGATGGTGTATTGTGCCTGACTGTGCTGAAACCCTTCTCTaaccgagagagagaaaacatgcCAGTAGGCACCCCCATATATAAACTGATGATTGATCCTTATATAGCTGTAGTGGCTGGTGCTCTGACAATTTGTAACATCCCTCTCGCCTTCCTTGAGCCCACTATCGCCAACTGGATGGAGGAAAACATGCATGCCAACCAGTGGGAGATCGGCATGACATGGTTCCCTGCCTTCTTCCCTCATGTTTTAGGTGTATATCTCACTGTCAAATTAGCAGCCAAGTACCCTCATCTCCAGTGGTTTTACGGGGCTATAGGTATGGTGTTCATAGGCGCAAGCTCCTGCACAGTGCCAGCCTGTAAAAACTTTGGACAGCTCATGATCCCGCTGTGCGGAATCTGTTTTGGCATCGCCTTTGTGGACACGGCGCTTCTGCCAACACTGGGTTTCCTGGTGGATGTGCGACATGTGTCAGTGTATGGCAGTGTGTACGCCATCGCAGACATATCTTACTGCGTGGCCTATGCCCTGGGGCCCGTGGTGGCTGGACAGATAGTGCACGACCTGGGCTTTGTTCAGCTCAACTTAGGCATGGGCCTCGCCAATGTACTTTACGCACCAGCGCTCCTTCTGCTGAAGAACGTGACAAAGATGAAGCCTTCTTTCTCCGAGCGAAATATGCTCCTGGAGGATGGCCCAACAGGACTGTATGATACGATTAAGATGGAGCAacgagagaagaagagaaagggtTTATGTACAACGATCGACGAGAATGGCATTGAAACCTTTCCGCAACGGTCGTATTCAGAGGAGGAATCCTCAGGAGGAGAGTATGCATAAAATACCTTCAACTGAGTGTAAAACTATCAAAGTGCCCATGTAGagttgtgtgcatcccgtccgaTCCAATCAATTGCATAACACGATTAGGATTGTGTAACACATACATTATTTACTGCTCCTGGTGACAATTCCTGCGGGTATTGTCAACCAAGTAGCTTCAGGCTTTTGCAGTAGAAAGGCGCTCGCTGGCGTTTGTTCATCTTAAAGTGAGAGTATTGTGAAAGATTTGTTCAGATAAATGTCTATTCATTAACAGTATTTATCACTGTATCAGAAACTGACTCATATTCAGGGAttatgtgtaaatgtattttaataaaaGAACAATTGTAATGTATGCGTCTTTCAATGTAATCTGTATTCATTTTGCCAGAGTTGTGCTGCTAAACTTAATATGCAATACTGTGTGTCACAAGAcgattttagaaaaatacaaaatatgtaaatgttctGAAATCTGCTTCTTGTTGTctaattattttgtttatttttgatgATGTACTTCTGGAATGCATAGCCTCATTGTGTGATCTGCGACTGTACATACATGTATATTCATGTACATAATTAAATCAATATTATGTGAA

Function

symbol description
slc18a3 Predicted to enable acetylcholine transmembrane transporter activity. Predicted to be involved in chemical synaptic transmission and neurotransmitter loading into synaptic vesicle. Predicted to be located in cytoplasm and neuron projection. Predicted to be part of AP-1 adaptor complex and AP-2 adaptor complex. Predicted to be active in cholinergic synapse; neuromuscular junction; and terminal bouton. Predicted to be integral component of synaptic vesicle membrane. Implicated in congenital myasthenic syndrome 21. Biomarker of Alzheimer's disease and Huntington's disease.

NR:

description
PREDICTED: probable vesicular acetylcholine transporter-A-like

GO: NA

KEGG:

id description
K14636 SLC18A3, VACHT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784793.1 True 2634 mRNA 0.47 1 16923301 16925934

Neighbor

gene id symbol gene type direction distance location
rgra rgr,LOC101074252,LOC104942455 coding upstream 12246 16903375 ~ 16911055 (+)
cdhr1a LOC102200236,LOC102293321,LOC101466539,LOC100690479,LOC108242829,LOC101155712,LOC106515358,LOC106904704,LOC103147748 coding upstream 45869 16864592 ~ 16877432 (+)
wnt8b wnt8b,LOC103355142,LOC104944325 coding upstream 278162 16639702 ~ 16645139 (+)
scdb LOC104930481,LOC104944327,LOC103355141 coding upstream 286480 16628572 ~ 16636821 (+)
LOC120547697 NA coding upstream 310612 16611277 ~ 16612689 (+)
chata chat coding downstream 615 16926549 ~ 16934687 (+)
c19h10orf53 LOC102787124,LOC104962667 coding downstream 9631 16935565 ~ 16936053 (+)
LOC120547985 ffar4 coding downstream 81539 17007473 ~ 17016963 (+)
LOC120547984 LOC104930316,LOC103360614,LOC104964615 coding downstream 92097 17018031 ~ 17024966 (+)
LOC120547963 LOC104930305,LOC103360621,LOC104964613 coding downstream 101995 17027929 ~ 17033153 (+)
G194261 LOC104930511,LOC102783363,LOC103355139 non-coding upstream 304709 16616810 ~ 16618592 (+)
G194257 NA non-coding upstream 309458 16608474 ~ 16613843 (+)
G194254 LOC103355137,LOC104930531 non-coding upstream 318241 16591475 ~ 16605060 (+)
G194231 rps24,LOC102780737 non-coding upstream 369813 16547481 ~ 16553488 (+)
LOC120548058 NA non-coding upstream 563939 16357895 ~ 16359362 (+)
G194375 NA non-coding downstream 112352 17038286 ~ 17039656 (+)
G194445 NA non-coding downstream 337988 17263922 ~ 17289530 (+)
G194451 NA non-coding downstream 374507 17300441 ~ 17302122 (+)
G194469 NA non-coding downstream 480941 17406875 ~ 17409080 (+)
G194485 NA non-coding downstream 505637 17431571 ~ 17431863 (+)
G194325 LOC102785938,LOC102201169,LOC100696907,LOC101467692,LOC101074032 other upstream 32351 16889400 ~ 16890950 (+)
hif1an hif1an other upstream 264224 16649868 ~ 16659077 (+)
trmt2b trmt2b other upstream 298204 16620024 ~ 16625097 (+)
G194185 NA other upstream 569470 16353191 ~ 16353831 (+)
lrmda clg13h10orf11,LOC102312243,LOC101474007,LOC106515339,LOC102208092 other upstream 793634 15912762 ~ 16129667 (+)
slc25a16 slc25a16 other downstream 559434 17485368 ~ 17494350 (+)
hpse2 hpse2,LOC102781816 other downstream 1133410 18059344 ~ 18115844 (+)
wu:fc17b08 LOC103355820 other downstream 1224797 18150731 ~ 18197092 (+)
prdm8 LOC104947267,LOC103357713 other downstream 1755023 18680957 ~ 18684337 (+)
G194908 NA other downstream 1918496 18844430 ~ 18850903 (+)

Expression


Co-expression Network