cdhr1a (LOC102200236,LOC102293321,LOC101466539,LOC100690479,LOC108242829,LOC101155712,LOC106515358,LOC106904704,LOC103147748)


Basic Information

Item Value
gene id cdhr1a
gene name LOC102200236,LOC102293321,LOC101466539,LOC100690479,LOC108242829,LOC101155712,LOC106515358,LOC106904704,LOC103147748
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 16864592 ~ 16877432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039784416.1
AGCATGTGAGCATTTGTCTTTAGCCCTCTCCAGTCGCACACAACACCTTGAGAGCTGCATCTCATGTACAGGACTCTCAACGGAGCCGTCTTCATGGTGCGGTTTCATGACTTCATTCTTTAGGATGAAGAATGTGAAGATATTACATTTGCCActgctttttgtgtttgtgcatcCCTGCTTTGCACAAGCAGACTTTGCCCCCTATTTCTATGACAATGGACCGTACAACTACAATGGGAACATGGCACTGTTCAGCCTCTCGGAGGATATGGCTGTCGGTACACAGATCTATTGTCTCAATGGCACAGACCCTGAGGGTCAGGAGGTGAGGTATGGTCTTTCCTTTGATCCAGGGTCCAAAGAATACTTCAGGGTCGACCCGATATCTGGAAACATCACATTGGTAGAACAGCTGGACAGAGAGAAACAAGATTCTATTGACGTTCTTGTCAGCATCACAGATGGGCAAAGCAAGgtTGTGGAAAGAGTCACAATATTTGTGATGGATGCAAATGATGAAAAGCCTGAATTCCTAAACATGCCAGCAATCATTGATGTACTGGAAaCAACTGGTTCTGGCAGCAGCATCTACAAAGTCGAGGCAGTGGACAAAGACACAGGCTCAGGGGGCTCAGTCACCTTCTTCCTCCAGAATTCTCAGTCCACTTTGTTTGCCATGGACCGACATAGTGGTATCCTTCGCATCAAGTCTGGAGAAATGTTGGACTATgagaaaacaaagacacactTTGTGACTGTCATTGCAAGGGATGGTGGTGGTGATTTTAATGGCAAGGAGCAGTTTATGTCATCCTCTGCTACCCTGACGATCAATGTGATTGACGCACAGGACACTCCGCCATTTTTTATTGGGACACCGTATTTTGGCTACGTTTATGAAATCTCAGAGCCAGGATCGGAAATATTCACTGTTGTAGCCAAAGATGGCGATGCGGGAAACCCAAATCCAATCCATTATTCCTTTGACGATGGTGACGATGGTGTATTTAGCATCAATAAAACAAGTGGTTGTATCACTCTGCTGACTCTCCCCATGTATCTGAAGAGAGAaatctttaacattaaagtaaaaGCATCAGAAGTAAGTCCTGAAGGCAGACTCATGGACTATGAGGTGACCACGGTGGTGATCCGTGTGGTGGACCTGAACAATAATCCACCTACTTTCTACGGAGAGAACGGCCCAAAGAACATGTTTGAGTTGACCATGTATGAGCATCCACCAGAGGGAGAGATACTCCGGGGGCTGAAAATCACTGTCAACGACTCTGATCAGggtgcaaatgctAAATTCAATTTGAAACTGATCGGACCGGGAAGGATGCTGCGAGTCGTTCCTCAGACTGTACTCAATGAGGCCCAGGTCACGATCTTAGTAGATGACTCTGCTGCGATGGACTATGAGAAACACCACTTTCTCACATACAAGCTACTTGCAGTTGAGATCGACACACCCGAGAGATTCAGTGCCACAGCAGACATTGTCATTCATCTCCTGGACACTAACGACAACGCTCCCAAATTCTCCTCAGATTACTACATTGCCAGAATTCCAGAAAACTCACCCGGTGGCTCCAATGTGGTGTCAGTCACGGCAACAGATCCCGACTCAGGACCTTGGGGTGAAGTGAAGTACTCTATCTACGGATCTGGGGCTGACTTATTCCTGATCCAACCTGCATCTGGGATCATCTACACCCAGCCGTGGGCGAGCCTGGACGCGGAGGTGAGGTCCAAGTATAACTTCTATGTAAAGGCAGAGGACGCAGAGGGGAAGTACAGCCTGGCTGAGGTATTTGTGACTGTGTTGGACCTGAATGACCACCCACCTGCATTCAATGACAACTTCCTCGAGAAGACTATGGTGATTGGAGCACCAGTGAAAATAGAGGCTGTAGACGACGATGCAGAAGTGCCCAACAATGTCATCGAGTATGCCATCATGAAAGCTGAGCCAGACAACAACATCTTTGATATTAACGCTGACACGGGGGAGATCATGCTCAAGTCCTACATCAAGTCAATGGCCATCATTCAGAACATCACCAAGCAGAGAGACTGCACCTGGTCACTAGTGGTGCAGGCCAGGGACCGAGGCCAGCCGTCCTTCAGCACCACTGCGGTCATCAAGATTGACATCACTGAAGCTACCCAACTCAGTGGGGGGCCTTTGGGATCATTTTTGATGCAGAATAGAAACAAGCCTTTGCAAATCCTAGGCATGCTTGCTGGTGTCATTAGTCTCATGGTCATAGTCACAGTCATCATCTCCACTGCAACATTTATGCGCAACAAAAAGTCCAACAGGATCCTGCCCAACCGCCGCGTGAGGAGGAGGGCACGGAAACAGCAAACTTGGAACTTCAAAAACCCCTTCAAGACACCAGAAACTGCCGGAGAGAAATTCAGAGTGGAAGAGGAAGAGCCGGAGCCAGAGGTCATAGTGGAGAATGTCAACTATAACAACAATGTGACCAACGTTGTGAGACACTGGCCTCTGCCGCCATGCGCCCCGTCTCTTCCCCCTCCACCACCCCCTTACATCCCAGGTGAAAGGCAGTGGGCAGTACCTACCGTCTCAGCAACAGTGGCACCCAAACCTAGAAAGAAGCCATTTATGAACAGACAGGACACTGTGAACTTAGCGCTGGTTTCAGAGCTCAAGATGAAACTGGAGCAGAAGAGGATGCTGAAACACTAATAGTGCTTGGCAAAACAGTCACACTTAaaggtccatttagtagctgCCCTGGAGCTGTCATGATCTTTATCAGCAGATCCAATCTGCCAAGTTGTCATGGAAATGTAGATGTTCAATATTACCATACGTTCTTTTTTTCATCCATGTTGTTGCAtagagaaatagaaaaaaaacacaagtggGCAGACTTCATTTGAAAATGATGAAGATGGCATGATCTAATCAAAAGCTCCATAATAGCCGCTAAATGGTCCTTGAGGTGAAATTGTTTTGTCGACTGATGTTTCCAAGGACAAGAATGAACTTTGAAACTCaatcaagtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcagatacactgatacagcTAAATTCCTTGTGTATCAATGATGTCATTTTAATGTGATGGGGAAAGATATTCCCTTCATGTGTATCATTATTCAGACCATGTTTTCAATCCATGACCATTCATTGCTTGTTTCAAGTTTCTGTGTCATTCTGTTACAGATAAATCCCACCCTTTGAACACTTTGTTGACACACTAGTGGCTTAAAGTTCCTCACCCCAGATCCCTTGTCGGGAAGAATGAAGTCATTCAGATTTCAACAAGCGAGACTGTTTATTTGGGATCCAACCAAGCTCCTTACAAGAGATTTCATGACACTTGAACTGACTAAAGAGATCAGCCTGAGGGAAGGGAACCAAAGCTATAACGTTAGGAAGAACTTTAATCCGTCTACGCAGGTGTATAGCAGTCACGATATGtttattttctgatttaaaGGACTGCGTCTCATTTGTTTACTACTTTTATATGTGGTGGTTTATCTGTTTCAATTGGTGTCTTTTGTCAAAAAAACCTTTGCTGTCAAAAGACACATTTTACTACCAATAAAAGAACTTAATTTGTAATTTCAA
>XM_039784417.1
TAGCATGTGAGCATTTGTCTTTAGCCCTCTCCAGTCGCACACAACACCTTGAGAGCTGCATCTCATGTACAGGACTCTCAACGGAGCCGTCTTCATGGTGCGGTTTCATGACTTCATTCTTTAGGATGAAGAATGTGAAGATATTACATTTGCCActgctttttgtgtttgtgcatcCCTGCTTTGCACAAGCAGACTTTGCCCCCTATTTCTATGACAATGGACCGTACAACTACAATGGGAACATGGCACTGTTCAGCCTCTCGGAGGATATGGCTGTCGGTACACAGATCTATTGTCTCAATGGCACAGACCCTGAGGGTCAGGAGGTGAGGTATGGTCTTTCCTTTGATCCAGGGTCCAAAGAATACTTCAGGGTCGACCCGATATCTGGAAACATCACATTGGTAGAACAGCTGGACAGAGAGAAACAAGATTCTATTGACGTTCTTGTCAGCATCACAGATGGGCAAAGCAAGgtTGTGGAAAGAGTCACAATATTTGTGATGGATGCAAATGATGAAAAGCCTGAATTCCTAAACATGCCAGCAATCATTGATGTACTGGAAaCAACTGGTTCTGGCAGCAGCATCTACAAAGTCGAGGCAGTGGACAAAGACACAGGCTCAGGGGGCTCAGTCACCTTCTTCCTCCAGAATTCTCAGTCCACTTTGTTTGCCATGGACCGACATAGTGGTATCCTTCGCATCAAGTCTGGAGAAATGTTGGACTATgagaaaacaaagacacactTTGTGACTGTCATTGCAAGGGATGGTGGTGGTGATTTTAATGGCAAGGAGCAGTTTATGTCATCCTCTGCTACCCTGACGATCAATGTGATTGACGCACAGGACACTCCGCCATTTTTTATTGGGACACCGTATTTTGGCTACGTTTATGAAATCTCAGAGCCAGGATCGGAAATATTCACTGTTGTAGCCAAAGATGGCGATGCGGGAAACCCAAATCCAATCCATTATTCCTTTGACGATGGTGACGATGGTGTATTTAGCATCAATAAAACAAGTGGTTGTATCACTCTGCTGACTCTCCCCATGTATCTGAAGAGAGAaatctttaacattaaagtaaaaGCATCAGAAGTAAGTCCTGAAGGCAGACTCATGGACTATGAGGTGACCACGGTGGTGATCCGTGTGGTGGACCTGAACAATAATCCACCTACTTTCTACGGAGAGAACGGCCCAAAGAACATGTTTGAGTTGACCATGTATGAGCATCCACCAGAGGGAGAGATACTCCGGGGGCTGAAAATCACTGTCAACGACTCTGATCAGggtgcaaatgctAAATTCAATTTGAAACTGATCGGACCGGGAAGGATGCTGCGAGTCGTTCCTCAGACTGTACTCAATGAGGCCCAGGTCACGATCTTAGTAGATGACTCTGCTGCGATGGACTATGAGAAACACCACTTTCTCACATACAAGCTACTTGCAGTTGAGATCGACACACCCGAGAGATTCAGTGCCACAGCAGACATTGTCATTCATCTCCTGGACACTAACGACAACGCTCCCAAATTCTCCTCAGATTACTACATTGCCAGAATTCCAGAAAACTCACCCGGTGGCTCCAATGTGGTGTCAGTCACGGCAACAGATCCCGACTCAGGACCTTGGGGTGAAGTGAAGTACTCTATCTACGGATCTGGGGCTGACTTATTCCTGATCCAACCTGCATCTGGGATCATCTACACCCAGCCGTGGGCGAGCCTGGACGCGGAGGTGAGGTCCAAGTATAACTTCTATGTAAAGGCAGAGGACGCAGAGGGGAAGTACAGCCTGGCTGAGGTATTTGTGACTGTGTTGGACCTGAATGACCACCCACCTGCATTCAATGACAACTTCCTCGAGAAGACTATGGTGATTGGAGCACCAGTGAAAATAGAGGCTGTAGACGACGATGCAGAAGTGCCCAACAATGTCATCGAGTATGCCATCATGAAAGCTGAGCCAGACAACAACATCTTTGATATTAACGCTGACACGGGGGAGATCATGCTCAAGTCCTACATCAAGTCAATGGCCATCATTCAGAACATCACCAAGCAGAGAGACTGCACCTGGTCACTAGTGGTGCAGGCCAGGGACCGAGGCCAGCCGTCCTTCAGCACCACTGCGGTCATCAAGATTGACATCACTGAAGCTATAAAATCCAGATTTGTCTCACACTTCTTGGGCCTAAGGAAACGTCCAGGGGTTGTGTTTGGGATTTGTTTGACCTTTGTCACCTTCGCCATTTCACTGACAATCTTCATTTCAACTTTTATATACTGGAGCTCTGTGAAAAAGTCCCGTGTACAATCTCAGGGCAAGATCAGAAAGATTATAAGGAGGCCTGTGCCATAAGTGAAGCTTGCCTTGAGATCATCAGCACAGCTGTAGCCTACTGTTGTTTTTACTCTGTGGTACCAATAATTTGTAGCAATTCATTTTCAAAGGATTTTGATGCAGAACAAGTGTCTGTAAAAGAGTACAGGAGCACAATTTCTCTATgctttttcccaatgttttgaTTTAATACTAACATTATGACACCACAACCAGAACCAAAATAACCAAATTAgttctgtttttttcattttcacatcaATCCATATATTCATTTTCAGATGCTGGATGGTCTCAGCTATAGGTTTCCCAGTCAACCTCTCTGATCTTGTCTtgacaaaatataaaacagCAGAACCATGAATTTAAGTATGCTCAGTAGGTTTAATTTGCAAGACATCTAAAAATATTatctttttatacaaacagtATTATTTGCAGTAAATTATACCTGGATTTTAAAGAGTTTTGTATTTTGCACCTCACATGATATTTTTGGCCAAATGATCAATACATGCAGTACTACAGTACATATGCGGGACAATATTTAGAAGTTAATCTTTGTGTGACAGACTATGACTTCAGTCCCATGGATGAATTCTCCCTGTGCTCTTTTACAGACCCAACTCAGTGGGGGGCCTTTGGGATCATTTTTGATGCAGAATAGAAACAAGCCTTTGCAAATCCTAGGCATGCTTGCTGGTGTCATTAGTCTCATGGTCATAGTCACAGTCATCAT

Function

NR:

description
PREDICTED: cadherin-related family member 1-like isoform X1

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16501 CDHR1, PCDH21; cadherin-related family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039784416.1 True 3720 mRNA 0.45 17 16864593 16877432
XM_039784417.1 False 3096 mRNA 0.44 17 16864592 16876004

Neighbor

gene id symbol gene type direction distance location
wnt8b wnt8b,LOC103355142,LOC104944325 coding upstream 219453 16639702 ~ 16645139 (+)
scdb LOC104930481,LOC104944327,LOC103355141 coding upstream 227771 16628572 ~ 16636821 (+)
LOC120547697 NA coding upstream 251903 16611277 ~ 16612689 (+)
tysnd1 tysnd1 coding upstream 288355 16572238 ~ 16576237 (+)
sar1ab LOC104930554,LOC104956665 coding upstream 292793 16567272 ~ 16571799 (+)
rgra rgr,LOC101074252,LOC104942455 coding downstream 25943 16903375 ~ 16911055 (+)
slc18a3a slc18a3,LOC102786515,LOC102201752,LOC105416362 coding downstream 45869 16923301 ~ 16925934 (+)
chata chat coding downstream 49117 16926549 ~ 16934687 (+)
c19h10orf53 LOC102787124,LOC104962667 coding downstream 58133 16935565 ~ 16936053 (+)
LOC120547985 ffar4 coding downstream 130041 17007473 ~ 17016963 (+)
G194261 LOC104930511,LOC102783363,LOC103355139 non-coding upstream 246000 16616810 ~ 16618592 (+)
G194257 NA non-coding upstream 250749 16608474 ~ 16613843 (+)
G194254 LOC103355137,LOC104930531 non-coding upstream 259532 16591475 ~ 16605060 (+)
G194231 rps24,LOC102780737 non-coding upstream 311104 16547481 ~ 16553488 (+)
LOC120548058 NA non-coding upstream 505230 16357895 ~ 16359362 (+)
G194375 NA non-coding downstream 160854 17038286 ~ 17039656 (+)
G194445 NA non-coding downstream 386490 17263922 ~ 17289530 (+)
G194451 NA non-coding downstream 423009 17300441 ~ 17302122 (+)
G194469 NA non-coding downstream 529443 17406875 ~ 17409080 (+)
G194485 NA non-coding downstream 554139 17431571 ~ 17431863 (+)
hif1an hif1an other upstream 205515 16649868 ~ 16659077 (+)
trmt2b trmt2b other upstream 239495 16620024 ~ 16625097 (+)
G194185 NA other upstream 510761 16353191 ~ 16353831 (+)
lrmda clg13h10orf11,LOC102312243,LOC101474007,LOC106515339,LOC102208092 other upstream 734925 15912762 ~ 16129667 (+)
LOC120548468 NA other upstream 1061077 15794970 ~ 15803515 (+)
G194325 LOC102785938,LOC102201169,LOC100696907,LOC101467692,LOC101074032 other downstream 11968 16889400 ~ 16890950 (+)
slc25a16 slc25a16 other downstream 607936 17485368 ~ 17494350 (+)
hpse2 hpse2,LOC102781816 other downstream 1181912 18059344 ~ 18115844 (+)
wu:fc17b08 LOC103355820 other downstream 1273299 18150731 ~ 18197092 (+)
prdm8 LOC104947267,LOC103357713 other downstream 1803525 18680957 ~ 18684337 (+)

Expression


Co-expression Network