RNA id: XM_039783242.1


Basic Information

Item Value
RNA id XM_039783242.1
length 1335
RNA type mRNA
GC content 0.44
exon number 9
gene id plek
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 15625317 ~ 15632128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGTCACTAAAACATTGACACAAGTTGTAGCTGACAGCAGCAAAGAGCAGGGCCATGGAGCCACAACAGATCAGAGAGGGATACTTGGTAAAGAAGGGTACATTGCTAAACTCCTGGAAGGCAGTGTGGGTAGTGCTGTCAGAAGATGGGCTGGAATtctataaaaagaaaacagaccACTCTCCGAAAGGAATGATCCCACTAAAGGGAGCCACGCTCATGAGTCCTTATCAGGATTTTGGCAAGAGGACGATGGTTTTCAAGATTACCACAGACAAGAAGCAGGATCACTTCTTCCAAGCCTCACatatggaggagagagagtttTGGGTCAAGGACATCAAGAGAGCCATTACCTGCCtcgaggggggaaaaaagtttGCCAGGAAGTCCACAAGACGCTCCATTCGCCTACCTGACACAGTCAACTTGACAGAACTGTACACACTAATGAAAGACCAAGATGATGGAGTAAAAGAGTTAAAACTGGAGCAGGAGAATCGAGTCTTCAACCACTGCTTCACCGGTGTGACAGTGGTAGAGTGGCTGATTTCAAAGGAgaaagcgagaaataggcctgAGGCGCTCATGTTAGCAACAGGGCTCCTGAATGagggttttctccagcctgcaAGTGACCTGTCCAAAGAGAGAGCAGAAAGTGGAGAGCAAACGGCCTTCTTAGATCAGACAATTGCTCTTTATTACTTTGCAGACAGTGGGTTCTTCTGTGAAGGCTACTCCAGTGATGAAGATGTGCTTCTAAAGGAAGAATTCAGAGGAAACATCATAAAACAGGGCTGTTTACTGAAACAGGGACATAAGAGAAAAAACTGGAAAGTGCGAAAGTTCGTGCTGAGAGATGACCCTGCTTATATGCATTATTATGATCCTACAAAGGGTGATGACCCCCTGGGCTCAATCCATCTCCGTGGGTCTGTGATTACAGCTGTGGAGTATGTGCCTGATGCCAAAAAATATGACATTGACGGCAACCTCTTTGAGATCATCACCTCAGATGAAACTCACTACTTCCTCCAAGCTGCCACAGCAGAAGAACGAAAGGAGTGGATCAAAGCAATACAGGCAGTGTCAAAAAGTGGAAAATAACAGGAGCATTGCAACAGCCACATGTTGATTGTAAAATCACATGTTTGCAATGTCTTTAATTACACGTAAGAGTGTGTCAGCAAAGTATAGCTGAATTATTATTGTAGTGTCATTCTAGAGTAACTGGGAAGTTTAACTCCTTCATACACTATCAAACTAATATTGCGATGTTTTTGTGCAGTATGTAACTAATTGAAGAAAAATAAAGGTTATAATGTCTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263343 lncRNA upstream 391541 15229947 ~ 15233788 (+) False zgc:91976
TU263331 lncRNA upstream 453687 15169606 ~ 15171642 (+) True G193957
TU263319 lncRNA upstream 465660 15158382 ~ 15159669 (+) True G193947
XR_005637098.1 lncRNA upstream 481734 15137628 ~ 15143595 (+) True LOC120547672
TU263554 lncRNA downstream 169953 15802081 ~ 15803490 (+) False LOC120548468
TU263562 lncRNA downstream 188897 15821025 ~ 15823765 (+) True G194119
TU263563 lncRNA downstream 224996 15857124 ~ 15857376 (+) True G194120
TU263570 lncRNA downstream 280667 15912795 ~ 16129650 (+) True lrmda
TU263575 lncRNA downstream 516225 16148353 ~ 16156796 (+) True G194128
XM_039784303.1 mRNA upstream 283316 15340127 ~ 15342013 (+) True LOC120548217
XM_039784302.1 mRNA upstream 287787 15249200 ~ 15337542 (+) True LOC120548216
XM_039784300.1 mRNA upstream 287787 15253250 ~ 15337542 (+) False LOC120548216
XM_039783471.1 mRNA upstream 391454 15209839 ~ 15233875 (+) True zgc:91976
XM_039783184.1 mRNA upstream 519611 15104804 ~ 15105718 (+) True LOC120547654
XM_039783233.1 mRNA downstream 33239 15665367 ~ 15678608 (+) True LOC120547683
XM_039783234.1 mRNA downstream 33687 15665815 ~ 15678608 (+) False LOC120547683
XM_039783236.1 mRNA downstream 137767 15769895 ~ 15777416 (+) True gtpbp2a
XM_039783239.1 mRNA downstream 157948 15790076 ~ 15794081 (+) True LOC120547687
XM_039783240.1 mRNA downstream 157948 15790076 ~ 15794081 (+) False LOC120547687
TU263049 other upstream 1548872 14074642 ~ 14076457 (+) True G193730
XR_005637191.1 other upstream 3254059 12351324 ~ 12371270 (+) False LOC120548560
TU263682 other downstream 721063 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 1257272 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 2936855 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 3048861 18680989 ~ 18682296 (+) False prdm8
TU264674 other downstream 3212302 18844430 ~ 18850903 (+) True G194908

Expression Profile