gtpbp2a (gtpbp2,LOC106513626)


Basic Information

Item Value
gene id gtpbp2a
gene name gtpbp2,LOC106513626
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 15769895 ~ 15777416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039783236.1
CAAATCGACGTCGGACGGTGCTGTTATTGTTCGGTTTGAAGAGTTTGGGGTGGTCGgtgctttgtttttattttgggggcTTTAAGCTACCACTAGCAGGCTAATTCCACTCAAAATACATCACCTGCTTGCCTGGGCTGaggtttattttaataataaagcaTCATTTTATCCAGGTAGTGGTAAGCTAACAAGTTATTTCACCAAAGTAGCTGATGGATGCGCGGGTGTCGGAGTTATTTGGCTCAGGAAATGGACACTGCTCTGGATCTCAAGGTGTTGCGTCCAATGTCAATCCGGGAAATGGCTACGGGGTAGTCCCCAAAAAGGCTTGTGTAAAGAACAACAAGAAACCCAAGACTCGATTCGCTCGAAACTTCAAACCAAGCAATAACACCCCGTATCTACCTCCAGAGGCTGAAGAGGGAAATATAGAGTACAAGCTAAAGCTGGTGAACCCCACGCAATACCGCTTTGAGCACCTGGCTACACAAATGAAATGGCGACTGCAGGAGGGCAGAGGTGAAGCTGTTTATCAAATAGGTGTTGAAGATAATGGCATGCTGGTGGGACTATCAGAGGAAGATATGAGGACGTCACTAAAGACGCTGCACATGCTGGCAGAGAAAGTTGGAGCCGACATTGCTgttctcagagagagagaggtggactACGACTCTGATGTGCCTCGTAAGATTGCTGAAGTTCTCATTCGCAAGGTGCCAGATGACCAGCAGTTCTTGGACCTGCGAGTAGCTGTACTGGGTAACGTGGACTCGGGCAAGTCCACTATGTTGGGTGTTTTGACACAGGGTGAGCTGGACAATGGACGGGGAAGAGCGAGGCTTAACCTCTTCAGACATCTACATGAGATCCAGACTGGACGCACTTCAAGCATCAGCTTTGAGATCCTTGGCTTCAATAGCAAAGGAGAGGTTGTGAATTACAGCGAGTCTCGGACAGCAGAGGAAATTTGTGAGAGTGCCTCTAAAATGATCACATTCATTGATCTGGCGGGTCACCACAAGTACCTGAAGACCACCATCTTTGGCCTCACCAGCTACTGTCCGGATTTCGCTATGCTGGTCGTCAGCGCAAATACCGGAATTGCTGGAACGACACGGGAGCATCTTGGACTTGCCATGGCCCTGAAGGTGCCCATATTCATCGTCATCAGTAAGGTGGACCTCTGTACGCGGGCCACAGTGGAGCGCACTGTGCGGCAGCTGGAGCGTGTCCTGAAGCAGCCGGGCTGTAACAAGGTGCCCATGGTTGTAAGCAATACAGACGATGCTGTCACAGCAGCACAGCAGTTCGCCCAATCACCCAACATCACACCCATCTTCACCGTGTCCAGTGTGTCTGGAGAGAGTCTAGACTTGCTCAAGGTCTTCTTCAACACCATCCCTCCTCTCAGCAACAGTAAGGAGCAGGAGGAGCTTATGCAACAGCTAACTGAGTTTCAGGTGGATGAGATCTACACAGTGCCAGAGGTGGGGACTGTGGTGGGAGGTACTCTGTACAGTGGTATTTGCCGTGAGGGAGATCATCTTGTAGTAGGGCCCACAGACTCAGGCCAATTCCACAAGTTGACCATCGGGAGCATCCAAAGAAACCGCTCAGCATGCAGGGTACTCAAGGCCGGTCAGGCTGCCACACTCGCCCTGGGCAACTTCGACCGCTCACTACTACGCAAGGGCATGGTGATGGTGAGTCCGGAGATGGATCCTACCATCTGCTGGATGTTTGAGGCTGAGATTGTGCTGCTCTTCCATGCCAAGACTTTTCACAAGGGCTTCCAGGTTACTGTGCACATTGGCAATGTGAGACAGACCGCCACTGTGGAAGCTGTATATGGCAAGGAGGAGCTGAGGACAGGGGAGAAAGCAGTGGTTCTCTTCAAGTTCATCAAGCACCCAGAATACCTAAAGGTGGGAGCTAAAGTTCTCTTCAGAGAGGGCGTGACTAAAGGGATCGGTCACGTCACCAAATTGCAGCCCATTGCCCAGTACCGGCCATCCCAAAGTGAGGATGACGAAGCCTAAGTTTCtcagaaaaaacaacagaaagaacCGTCCCACCCAAAAACGAGGTGCTTTATATAAACATCCTCCAGCTTTCTCCAAAGGCCACTCTAACCTGTTCATTATCTCTCTTGTTTTATCACCCTTTTCCAAAGCCTTTGTTTCACCATCCTCTTAATTTTTCTCCCTCATCTTTTTAAATAACTCCTGATTTATATTAGTCTGCTTTCTGGTGTCGAGGTTAAAAGAGTGTTGCTTTTCACGGcactgttaaaggtcccatgacatggtgctctttggatgcttttctatagaccttagtggtcccctaatactatatctgaagtctctttcccaaaattcagccttggtgcagaattacagc

Function

symbol description
gtpbp2 Enables identical protein binding activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, no-go decay and rescue of stalled ribosome. Predicted to be located in extracellular region and platelet alpha granule lumen.

NR:

description
PREDICTED: GTP-binding protein 2-like

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K24888 GTPBP2; GTP-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039783236.1 True 2409 mRNA 0.49 12 15769895 15777416

Neighbor

gene id symbol gene type direction distance location
LOC120547683 bfsp1,LOC102795616 coding upstream 91287 15665367 ~ 15678608 (+)
plek plek coding upstream 137767 15625317 ~ 15632128 (+)
LOC120548217 dkk1 coding upstream 427882 15340127 ~ 15342013 (+)
LOC120548216 prkg1,LOC103355670,LOC100694992,LOC101466538,LOC103476798 coding upstream 432353 15249200 ~ 15337542 (+)
LOC120547654 NA coding upstream 664177 15104804 ~ 15105718 (+)
LOC120547687 NA coding downstream 12660 15790076 ~ 15794081 (+)
vdac2 LOC104930678,LOC104949930,LOC103355660,LOC101069732 coding downstream 28957 15806373 ~ 15814586 (+)
zcchc24 zcchc24,LOC101174942,LOC101070883,LOC103133498 coding downstream 585337 16362753 ~ 16396088 (+)
ppa1b LOC107090739,LOC106917942,LOC108242913,LOC106515349,LOC103476835 coding downstream 784481 16561897 ~ 16566248 (+)
sar1ab LOC104930554,LOC104956665 coding downstream 789856 16567272 ~ 16571799 (+)
G193957 papss2,LOC103355675 non-coding upstream 598253 15169606 ~ 15171642 (+)
G193947 pten,LOC104929647,LOC103360879 non-coding upstream 610226 15158382 ~ 15159669 (+)
LOC120547672 NA non-coding upstream 626300 15137628 ~ 15143595 (+)
LOC120548564 NA non-coding upstream 640760 15126807 ~ 15129135 (+)
G193935 NA non-coding upstream 696585 15072898 ~ 15073310 (+)
G194119 NA non-coding downstream 43609 15821025 ~ 15823765 (+)
G194120 NA non-coding downstream 79708 15857124 ~ 15857376 (+)
G194128 NA non-coding downstream 370937 16148353 ~ 16156796 (+)
G194183 LOC103386989 non-coding downstream 559884 16337300 ~ 16340067 (+)
LOC120548058 NA non-coding downstream 580479 16357895 ~ 16359362 (+)
zgc:91976 sgms1 other upstream 536020 15209839 ~ 15233875 (+)
G193730 mettl10 other upstream 1693438 14074642 ~ 14076457 (+)
chrm3a LOC101465548 other upstream 2560685 13123018 ~ 13209210 (+)
LOC120548560 plekha1,LOC103359314,LOC101483871,LOC102289782,LOC102791929,LOC104931082 other upstream 3396624 12351323 ~ 12373271 (+)
sf3b5 sf3b5 other upstream 3479365 12287013 ~ 12290530 (+)
LOC120548468 NA other downstream 17554 15794970 ~ 15803515 (+)
lrmda clg13h10orf11,LOC102312243,LOC101474007,LOC106515339,LOC102208092 other downstream 135346 15912762 ~ 16129667 (+)
G194185 NA other downstream 575775 16353191 ~ 16353831 (+)
trmt2b trmt2b other downstream 842608 16620024 ~ 16625097 (+)
hif1an hif1an other downstream 872452 16649868 ~ 16659077 (+)

Expression


Co-expression Network