RNA id: TCONS_00071451


Basic Information

Item Value
RNA id TCONS_00071451
length 431
RNA type processed_transcript
GC content 0.49
exon number 4
gene id XLOC_036577
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 33895773 ~ 34065573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagagagagagatgaagccAGAAGTCTGAGTCTCCATTTAAGCTCCACTCTCAGCAAGAGAAGCAGTATAAATCGGGAGGTATTGAGACCTGGGTATCCAACTGGTTCGGCAACAAGAGGATCCGCTACAAAAAAAACATCGGCAAGTTCCAAGAGGAGGCCAACCTGTATGCCGCTAAGACAGCCGTGACTGCAGCACATGCAGCAGCTGCCGCCGTCCAGAATAGTCAGACCAACTCACCCACCACACCCAACTCCGGATTCCAGATGAAAGATGAAGAATTTCAGCTGGATTCTGCAGAGAACAAAAACACTCTATTAACCAACATGTTCACTGGTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGTCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAATGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0048666 neuron development biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000405-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; eye; and telencephalon. Orthologous to human PBX3 (PBX homeobox 3).

Ensembl:

ensembl_id ENSDART00000140712

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071442 lncRNA downstream 229499 33622404 ~ 33676878 (-) False XLOC_036575
TCONS_00072066 lncRNA downstream 229559 33656337 ~ 33676818 (-) False XLOC_036575
TCONS_00071443 lncRNA downstream 229588 33656337 ~ 33676789 (-) False XLOC_036575
TCONS_00072067 lncRNA downstream 229596 33673531 ~ 33676781 (-) True XLOC_036575
TCONS_00071441 lncRNA downstream 290704 33593650 ~ 33615673 (-) True XLOC_036574
TCONS_00072068 lncRNA upstream 160961 34073942 ~ 34074602 (-) True XLOC_036578
TCONS_00072489 lncRNA upstream 174080 34087061 ~ 34115258 (-) True XLOC_036579
TCONS_00072069 lncRNA upstream 273244 34186225 ~ 34190845 (-) True XLOC_036580
TCONS_00072070 lncRNA upstream 280775 34193756 ~ 34233582 (-) False XLOC_036581
TCONS_00072071 lncRNA upstream 306108 34219089 ~ 34233582 (-) True XLOC_036581
TCONS_00071440 mRNA downstream 337413 33420677 ~ 33568964 (-) True XLOC_036573
TCONS_00071437 mRNA downstream 524464 33260675 ~ 33381913 (-) False XLOC_036571
TCONS_00071436 mRNA downstream 524947 33258580 ~ 33381430 (-) False XLOC_036571
TCONS_00071435 mRNA downstream 751700 33132502 ~ 33154677 (-) True XLOC_036570
TCONS_00071433 mRNA downstream 792175 32914626 ~ 33114202 (-) True XLOC_036568
TCONS_00071457 mRNA upstream 428904 34341885 ~ 34427366 (-) False XLOC_036583
TCONS_00071458 mRNA upstream 428909 34341890 ~ 34427364 (-) False XLOC_036583
TCONS_00071461 mRNA upstream 429555 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071460 mRNA upstream 429555 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071459 mRNA upstream 429555 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071444 other downstream 122823 33783438 ~ 33783554 (-) True XLOC_036576
TCONS_00071434 other downstream 974618 32931643 ~ 32931759 (-) True XLOC_036569
TCONS_00071428 other downstream 1111901 32787850 ~ 32794476 (-) True XLOC_036564
TCONS_00071398 other downstream 2205347 31692259 ~ 31701030 (-) True XLOC_036549
TCONS_00071393 other downstream 2502429 31395824 ~ 31403948 (-) True XLOC_036545
TCONS_00071467 other upstream 1463262 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071488 other upstream 2902089 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071489 other upstream 2980652 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071508 other upstream 3543534 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 4711174 38624155 ~ 38631651 (-) True XLOC_036624

Expression Profile

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