XLOC_036604


Basic Information

Item Value
gene id XLOC_036604
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36732916 ~ 36983161 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072497
CTTGCATAAGTTTTTCAAGCACGTGTGTTGCAGGGCATGCTATTAAACAGACTTTCAACTTTGCATGCACGGAGTTCTGGAACATGTGAACCTGCATCTCCACCAAAGGGAAGGACTGCCTGAAACTATCGTTGAAGAGGAAGACCTCTCTCTGGTGGACTCCAGACCTCTGAGGACGATTAGGGTCCGGGACTTCATGGAGCTGACAGCAGCACACCAGTCTCCGGTGAGGCAGAGACAAAACCTTTAATCAAAGAAAAGAGACTGAATTAAAGGCAGCGGGAGAGAGAGTCAGTTCCTGTGGGAAGATTACGCAACACCAACAAACAGTACAGaattcttcgccagactcaaaccctgttgtcgtgGTCAGCTCTTCtatgcgtctcaagtccgctgacgtacatggcgaACTAACTAGACACTTACTGGTAACAACGGGATATCcttccatatggagGCATTCCCTGAGTCACTGTACATCATCTCCCAGTTTTCCGACCCTCTCACCCGTGCTCCTCTACGGGGTCCGAGCCCATTCTCCAAGGCACTGGTGTTTCCACCTCTTAAGTTTCGTGATTGGCTGGGGGATGACGTGTGGACGGGGACACTGCTCGCCCCGGCTGAACCACCTGAAATATCAATGAAGAGAAAACAATGCTTCTCAAATGACTCAGGCTTTATTGCAACATAAAGCCTATTCTAGCTTCAATCTGAGCACTCATTGAGTTATTATTCCAAGTCATTCTCCTTTGATTCAAGTCTAAATGGGTTTTCACGAAGCCAAGAAAAACAACCAAATGAAACCATAATTGTGCATTACTGTAAAATAGGTtcatcatttatgtttttattgtatcaTTAAATTGTGTGTACTTGTTTAC
>TCONS_00071488
CAGCTCACCCCCTCCTGCTGGAGAAGAGGGAGCGATCTCTTAGAGACCATACTAGACTATTCCTGGAAGTTGCTTATTACGCCAACTACCCGGAGGACACACTCTGCACATTCTACAATAGCAGCCTTAACAACGAATACAAAGCGCAGTCAT
>TCONS_00072499
CTGGAACATGTGAACCTGCATCTCCACCAAAGGGAAGGACTGCCTGAAACTCAGATCGTTGAAGAGGAAGACCTCTCTCTGGTGGACTCCAGACCTCTGAGGACGATTAGGGTCCGGGACTTCATGGAGCTGACAGCAGCACACCAGTCTCCGGTGAGGCAGAGACAAAACCTTTAATCAAAGAAAAGAACAGTACAGaattcttcgccagactcaaaccctgttgtcgtgGTCAGCTCTTCtatgcgtctcaagtccgctgacgtacatggcgaACTAACTAGACACTTACTGGTAACAACGGGATATCcttccatatggagCAGCTCACCCCCTCCTGCTGGAGAAGAGGGAGCGATCTCTTAGAGACCATACTAGACTATTCCTGGAAGTTGCTTATTACGCCAACTACCCGGAGGACACACTCT
>TCONS_00072500
ATCAAAACAGCTCACCACTTATAAAGGCAGTCAGGAGTTCTGGAACATGTGAACCTGCATCTCCACCAAAGGGAAGGACTGCCTGAAACTATCGTTGAAGAGGAAGACCTCTCTCTGGTGGACTCCAGACCTCTGAGGACGATTAGGGTCCGGGACTTCATGGAGCTGACAGCAGCACACCAGTCTCCGGTGAGGCAGAGACAAAACCTTTAATCAAAGAAAAGAACAGTACAGaattcttcgccagactcaaaccctgttgtcgtgGTCAGCTCTTCtatgcgtctcaagtccgctgacgtacatggcgaACTAACTAGACACTTACTGGTAACAACGGGATATCcttccatatggagACTCTAATCTGGTCATTGTGGTCAAC
>TCONS_00072501
ATCAAAACAGCTCACCACTTATAAAGGCAGTCAGGAGTTCTGGAACATGTGAACCTGCATCTCCACCAAAGGGAAGGACTGCCTGAAACTATCGTTGAAGAGGAAGACCTCTCTCTGGTGGACTCCAGACCTCTGAGGACGATTAGGGTCCGGGACTTCATGGAGCTGACAGCAGCACACCAGTCTCCGGTGAGGCAGAGACAAAACCTTTAATCAAAGAAAAGAACAGTACAGaattcttcgccagactcaaaccctgttgtcgtgGTCAGCTCTTCtatgcgtctcaagtccgctgacgtacatggcgaACTAACTAGACACTTACTGGTAACAACGGGATATCcttccatatggagACTCTAATCTGGTCATTGTGGTCAAC
>TCONS_00071489
CTTGCATAAGTTTTTCAAGCACGTGTGTTGCAGGGCATGCTATTAAACAGACTTTCAACTTTGCATGCACGGAGTTCTGGAACATGTGAACCTGCATCTCCACCAAAGGGAAGGACTGCCTGAAACTATCGTTGAAGAGGAAGACCTCTCTCTGGTGGACTCCAGACCTCTGAGGACGATTAGGGTCCGGGACTTCATGGAGCTGACAGCAGCACACCAGTCTCCGGTGAGGCAGAGACAAAACCTTTAATCAAAGAAAAGAGACTGAATTAAAGGCAGCGGGAGAGAGAGTCAGTTCCTGTGGGAAGATTACGCAACACCAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093488

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072497 False 884 lncRNA 0.46 6 36732916 36968730
TCONS_00071488 False 153 processed_transcript 0.49 1 36815070 36815222
TCONS_00072499 False 428 lncRNA 0.50 4 36815118 36959996
TCONS_00072500 False 385 lncRNA 0.48 5 36871197 36983161
TCONS_00072501 False 385 lncRNA 0.48 5 36873084 36983161
TCONS_00071489 True 325 processed_transcript 0.49 4 36893633 36968730

Neighbor

gene id symbol gene type direction distance location
XLOC_036603 gpkow coding downstream 114843 36591791 ~ 36618073 (-)
XLOC_036602 ccdc157 coding downstream 178184 36541949 ~ 36554732 (-)
XLOC_036601 CU694380.2 coding downstream 191060 36528233 ~ 36541856 (-)
XLOC_036600 mhc2a coding downstream 257588 36472444 ~ 36475328 (-)
XLOC_036599 mhc2dab coding downstream 263799 36466771 ~ 36469117 (-)
XLOC_036607 renbp coding upstream 47813 37030974 ~ 37043900 (-)
XLOC_036608 si:ch211-218o21.4 coding upstream 62849 37046010 ~ 37056622 (-)
XLOC_036609 zgc:162200 coding upstream 75738 37058899 ~ 37105226 (-)
XLOC_036610 rbm39b coding upstream 245450 37228611 ~ 37249991 (-)
XLOC_036611 rh50 coding upstream 276237 37259398 ~ 37263524 (-)
XLOC_036590 NA non-coding downstream 952229 35766632 ~ 35780687 (-)
XLOC_036588 NA non-coding downstream 1140408 35579388 ~ 35592508 (-)
XLOC_036587 BX322651.1 non-coding downstream 1356559 35376243 ~ 35376357 (-)
XLOC_036584 BX005399.13 non-coding downstream 2270525 34461160 ~ 34462391 (-)
XLOC_036614 NA non-coding upstream 982987 37966148 ~ 37966860 (-)
XLOC_036622 NA non-coding upstream 1602892 38586053 ~ 38587434 (-)
XLOC_036624 CR628410.1 non-coding upstream 1640994 38624155 ~ 38631651 (-)
XLOC_036626 CR392001.2 non-coding upstream 1955129 38938290 ~ 38938960 (-)
XLOC_036628 NA non-coding upstream 2148638 39131799 ~ 39132638 (-)

Expression


Co-expression Network