XLOC_036603 (gpkow)


Basic Information

Item Value
gene id XLOC_036603
gene name gpkow
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36591791 ~ 36618073 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071487
ACAACAAACATGGCGTCGCCTGAGCGGTATCAAGAACGTGAATCACTGAAAAAGGATATTAGCCAAGACGATGGGGGCAAAAAAGCAGCTCCGATATCTTTCGGTTTTAGTAAAACACTGATCAAGGTCAAATCCGGGAAAGCGGAGGAGCGAGATTATTTAGTTGAAGTCGAAGGAAAAGAACTAAAAGGAACCAAACCGGTGGAGAAACCGAAGGAGCTGATTATCCCATTGATCCACAAGAACCGCTGGTACCGACAGGATGCTGAGCGAGCGGATAAAACCAGCGAAGAGAAGACCGAAGAACCGTCAGAGGTGAAGCAGGACACGGTCGAGTCTCAAGCTGTCAAAGAACTCATCgaagAGTCTCAGAAGTACCAGGACAGATGGAAGAATGGACCGCAGTCGGATCCAAACTTTGCTATTCCTCTTCTCATGCAGAACCAGGTCCCTGATGGCTTTGAGGATGGAGATAAAGTCAATGTGGATCTGCGACCTGAGTCGTCCACAGAGGCCGACTATGAGCGTGTGCCTGTGGAGGCTTATGGATTGGCCATGCTGAAGGGAATGGGCTGGAAGCAAGAAGAAGGAATCGGACGCACATTTAAACAAGATGTAAAGCCCATAGAGCATCAGTTGAGGCCTAAAGGGTTGGGTTTGGGTGCTGATCGATCTGCAATTAAAGACCTGGAGCCCGGAGTCCCCAAGAGACCACCTAAACCTGGAGATGAGAAGGGGAAAGAGGAGGAGGCTCTAGTTCTGGGGCCTGGAGGATGTGTGCAGGTCCTGGCAGGAGCACATAAGGACCTGTACGGGAAGATAGAGGGAGTGGATCCAGATAACGGCAGAGTTGTGGTCAAACTCGCCATTGGCGGCAAGACAGTGACCATCATTCAGCACTCCATTAAACTAGTCACAAGGAAAGAATACGACAAATACAGCAAAGACCTCAGTCGTCTTAGTAAAGCACATAAAGACAAGGAAAGAGAAAAAGAACGGGAACAAAAGAGGGAACAGGAGCAGAGGTTAAACGGCAAAGATGAGAGAGGAAAGACGGATAGAAGTCGAGAAAAAGACAGAGACcagaagaaaagaaaacacagagaatcAAGCACAGACCGAGAGAAGCCTCCGCCAGCTAAGGAGTCTCGCTCTTCTCCACCAGCTCCATCATGGCTCCAGCGGGACCTCCGTGTGCGCTTCATTGATAAAGCTTTCAAAGGAGGAAAATACTACAACTCTAAGATGAGAGTGGAGGACGTCCTGACCCCTCACACCTGTGTTTGTCGTACAGAAGAGGGCAGAATGCTGGACGATATTAGACAGAAAATGCTGGAGACAATTGTACCCAAGAACGACTCTGACTATATAATGGTGGTTCTGGGAGAACACAGAGGACAGGTGGGCCGCATCTTGAAGCGGGACAGAGAGAAGTGTCGAGCGATGGTTCAGCTGGATCGATATGAGGAAAGGGTGTTCACTCTTGACTACGACACCATCTGTCATTATGTGGGCGGGACAGATCACTGAGCAGCCAATCAGATAATACAACACACATTTCATCAAGTAGCAATTGGCTGCTTTTCCCGTCATCACAAAAGACCAACATGtcatatttttaatacaatttagaCTTAATTTATCTTGCCAGTttgatgttgtatttttaaatgcCAGTTCAGACTCAGATGTGGAGTCATGATTGGTTCTTAAAGCAACATAAATGTCCTGTTAGCATAAGAGTGTGTTATGTTGCTAATAGAAACGTGTCATGTTTCTGTCTGTATAAATGAATGTTTAGGGTCATCTTCATATCAGTGTCTATTGCAGATCTGGGAAGAAAATATCAAAGTTTGATCCCTTGTAATTGTGGAAAAGACTTTCACTGCCAGTTCATTGGAATCAAAACActtgctttgttaattttttttagtcCAATAAAGACCTCAGTTTGTTGTTTACGTTTGCACGCCACCTACAAATCTCATccttttata

Function

symbol description
gpkow Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human GPKOW (G-patch domain and KOW motifs).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030616-159 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human GPKOW (G-patch domain and KOW motifs).

Ensembl:

ensembl_id ENSDARG00000029612

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071487 True 1997 mRNA 0.46 11 36591791 36618073

Neighbor

gene id symbol gene type direction distance location
XLOC_036602 ccdc157 coding downstream 37059 36541949 ~ 36554732 (-)
XLOC_036601 CU694380.2 coding downstream 49935 36528233 ~ 36541856 (-)
XLOC_036600 mhc2a coding downstream 116463 36472444 ~ 36475328 (-)
XLOC_036599 mhc2dab coding downstream 122674 36466771 ~ 36469117 (-)
XLOC_036598 si:zfos-2070c2.3 coding downstream 178855 36397818 ~ 36412936 (-)
XLOC_036604 NA coding upstream 114843 36732916 ~ 36983161 (-)
XLOC_036605 NA coding upstream 176428 36794501 ~ 36798705 (-)
XLOC_036606 NA coding upstream 358925 36976998 ~ 36978006 (-)
XLOC_036607 renbp coding upstream 412901 37030974 ~ 37043900 (-)
XLOC_036608 si:ch211-218o21.4 coding upstream 427937 37046010 ~ 37056622 (-)
XLOC_036590 NA non-coding downstream 811104 35766632 ~ 35780687 (-)
XLOC_036588 NA non-coding downstream 999283 35579388 ~ 35592508 (-)
XLOC_036587 BX322651.1 non-coding downstream 1215434 35376243 ~ 35376357 (-)
XLOC_036584 BX005399.13 non-coding downstream 2129400 34461160 ~ 34462391 (-)
XLOC_036614 NA non-coding upstream 1348075 37966148 ~ 37966860 (-)
XLOC_036622 NA non-coding upstream 1967980 38586053 ~ 38587434 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_02187389_02199845 GPKOW coding CI01000146 null 2186487 ~ 2200670 (+)