XLOC_036601 (CU694380.2)


Basic Information

Item Value
gene id XLOC_036601
gene name CU694380.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36528233 ~ 36541856 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071483
atatatatatataaatgcacccACCTCTTTCTTAGGATCTGAATTCAGTCAATGTTCAGTCCAAAATGAAGAAAGGTTCTGGTAAAGGATCTAAAAACAAACGAAAATCAAAACCTGGCAAATGTCTGTTAAAAAGAACCAAAGTTGAAGGGGACCCTGAATCAGAAAACATACCTCCTTGTCCAACACCATCACAAAATAAAACTGCTAGAGACCATATAAGGACCATTTTAGCTGACACTCCATCCCACCTAAACATCACTGCTTCAGCGGATCATGGAAGTCCAGTCTCTGCTCCAACAATCAGCCAGACAAGTGTGACAGGAAACCTAACTATAAATCAGACCTTTACAGTGGTCGTGCAGAATCCCGCTGATAGTTCTTTGAACCACTTGGACGTTAAAGAGAGAACAGATGATGAATATCAGATTCTGCCTTCAAGCAGCACTGAACAGGTCCCTGGAAAATGTAAAAGCTCAAATCGTCGTCGACACCTGTCCTTCAGAAATCATCTGGAACAACCTACATTAACTCTTGCAGAGGTGAAAAAGAACACAAATCATTTAAGAGAGgttacTGTTGCTGGAAAGATCTTAGACCGGCAGCCTGCAATCATCATTCTACCCAACGAAGAAGGAGTGCGTTATTCTCATTATATTCTTTCTGATACCACTGCAAATGTTCATCTGAGTTTAGCACATGAATTTAATATAGCCATCAATCAGTGGTATGTATTTAAAAGTCTTTCCATTTGTGACTTTGGAATGGGGAATGTGCTTTGCTCAAATGAATTCACCAAATTGGAGGAAATTTCTTCTTTAGAAGGCCGGGATCCAAAAGAGACGGTCATCTCAGGGGTGGTCACTGAGGCACTACTGACCGTTAAATACATCTGTTCATGTGGTGCCACTCTCTTGCTCTCTGATACCAAATTATTCTGGATTAAATGCAAGGAGTGCAGCAAAAGCTGCCGATGTGTAAACATTCAAAACAAAGCCACGGCCAACATAACCATCAAACAGCTGGATGGAAGAGATGAGAGAGTGGTGTTACACGATGCGCTGCTGCACTCCATTGTCAGCTTCAAGAATGAGGGATACTGTGATAGTCAGCAGTTAGAGGAGCGTCTGCTGAAAGCTGAGAGATTGACTGTGGTCTGTGTAAACGATGAGCCTCAGAGTGTTCAAATAGAAGAACTGGGAAAATCCAAGCATGTGGCAAAGCACTTTTTCTCTTTGGGAAGATGTTGTGTTGTGTGA
>TCONS_00071484
atttttttgtaatttatgtaATTGGTTGACAACTTTAATGCTCAAATTTATATAGTCAAGCAGTGTATagtcttcattcattttttttcttcatgtccAGTTGAAGGGGACCCTGAATCAGAAAACATACCTCCTTGTCCAACACCATCACAAAATAAAACTGCTAGAGACCATATAAGGACCATTTTAGCTGACACTCCATCCCACCTAAACATCACTGCTTCAGCGGATCATGGAAGTCCAGTCTCTGCTCCAACAATCAGCCAGACAAGTGTGACAGGAAACCTAACTATAAATCAGACCTGGTCCCTGGAAAATGTAAAAGCTCAAATCGTCGTCGACACCTGTCCTTCAGAAATCATCTGGAACAACCTACATTAACTCTTGCAGAGGTGAAAAAGAACACAAATCATTTAAGAGAGGTCAGTAAATAGTTTACTATATTTTGATTGAAATACAGCACTTGTGTTTTACACTAGtaacaaaatgttttgaaaatgaaaaacaaccatattatgcattataaaaggttcACATTTTGGTTTTGGGAGTTCCCAACAGTACATGTATGGAACACACATCACAGCTTATCAAGTGCAAGAAGATATGTGGAGTATATGTGAGTGTGAGCCCAATGTAGAAATGTATCTGCTTGTTAAATGTGACATCACGCATAGCGGCTTTGGGGTCCAAGaactctatcaaactgtatggggagacacAACAAATGCTCGTGatcaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071483 False 1259 lncRNA 0.42 7 36528233 36541856
TCONS_00071484 True 742 lncRNA 0.38 3 36533560 36541482

Neighbor

gene id symbol gene type direction distance location
XLOC_036600 mhc2a coding downstream 52905 36472444 ~ 36475328 (-)
XLOC_036599 mhc2dab coding downstream 59116 36466771 ~ 36469117 (-)
XLOC_036598 si:zfos-2070c2.3 coding downstream 115297 36397818 ~ 36412936 (-)
XLOC_036597 si:zfos-2070c2.1 coding downstream 140846 36377006 ~ 36387387 (-)
XLOC_036596 mhc2bl coding downstream 157638 36362898 ~ 36370595 (-)
XLOC_036602 ccdc157 coding upstream 93 36541949 ~ 36554732 (-)
XLOC_036603 gpkow coding upstream 49935 36591791 ~ 36618073 (-)
XLOC_036604 NA coding upstream 191060 36732916 ~ 36983161 (-)
XLOC_036605 NA coding upstream 252645 36794501 ~ 36798705 (-)
XLOC_036606 NA coding upstream 435142 36976998 ~ 36978006 (-)
XLOC_036590 NA non-coding downstream 747546 35766632 ~ 35780687 (-)
XLOC_036588 NA non-coding downstream 935725 35579388 ~ 35592508 (-)
XLOC_036587 BX322651.1 non-coding downstream 1151876 35376243 ~ 35376357 (-)
XLOC_036584 BX005399.13 non-coding downstream 2065842 34461160 ~ 34462391 (-)
XLOC_036582 BX511073.1 non-coding downstream 2195657 34271072 ~ 34332576 (-)
XLOC_036614 NA non-coding upstream 1424292 37966148 ~ 37966860 (-)
XLOC_036622 NA non-coding upstream 2044197 38586053 ~ 38587434 (-)

Expression


Co-expression Network