RNA id: TCONS_00071484


Basic Information

Item Value
RNA id TCONS_00071484
length 742
lncRNA type lincRNA
GC content 0.38
exon number 3
gene id XLOC_036601
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36528233 ~ 36541856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttttgtaatttatgtaATTGGTTGACAACTTTAATGCTCAAATTTATATAGTCAAGCAGTGTATagtcttcattcattttttttcttcatgtccAGTTGAAGGGGACCCTGAATCAGAAAACATACCTCCTTGTCCAACACCATCACAAAATAAAACTGCTAGAGACCATATAAGGACCATTTTAGCTGACACTCCATCCCACCTAAACATCACTGCTTCAGCGGATCATGGAAGTCCAGTCTCTGCTCCAACAATCAGCCAGACAAGTGTGACAGGAAACCTAACTATAAATCAGACCTGGTCCCTGGAAAATGTAAAAGCTCAAATCGTCGTCGACACCTGTCCTTCAGAAATCATCTGGAACAACCTACATTAACTCTTGCAGAGGTGAAAAAGAACACAAATCATTTAAGAGAGGTCAGTAAATAGTTTACTATATTTTGATTGAAATACAGCACTTGTGTTTTACACTAGtaacaaaatgttttgaaaatgaaaaacaaccatattatgcattataaaaggttcACATTTTGGTTTTGGGAGTTCCCAACAGTACATGTATGGAACACACATCACAGCTTATCAAGTGCAAGAAGATATGTGGAGTATATGTGAGTGTGAGCCCAATGTAGAAATGTATCTGCTTGTTAAATGTGACATCACGCATAGCGGCTTTGGGGTCCAAGaactctatcaaactgtatggggagacacAACAAATGCTCGTGatcaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194327

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072496 lncRNA downstream 752873 35766632 ~ 35780687 (-) True XLOC_036590
TCONS_00072495 lncRNA downstream 941052 35579388 ~ 35592508 (-) True XLOC_036588
TCONS_00072494 lncRNA downstream 941715 35579388 ~ 35591845 (-) False XLOC_036588
TCONS_00071464 lncRNA downstream 2071169 34461160 ~ 34462391 (-) False XLOC_036584
TCONS_00072497 lncRNA upstream 191434 36732916 ~ 36968730 (-) False XLOC_036604
TCONS_00072498 lncRNA upstream 253019 36794501 ~ 36798705 (-) True XLOC_036605
TCONS_00072499 lncRNA upstream 273636 36815118 ~ 36959996 (-) False XLOC_036604
TCONS_00072500 lncRNA upstream 329715 36871197 ~ 36983161 (-) False XLOC_036604
TCONS_00072501 lncRNA upstream 331602 36873084 ~ 36983161 (-) False XLOC_036604
TCONS_00071482 mRNA downstream 58232 36472444 ~ 36475328 (-) True XLOC_036600
TCONS_00071481 mRNA downstream 64443 36466771 ~ 36469117 (-) True XLOC_036599
TCONS_00071479 mRNA downstream 120624 36397818 ~ 36412936 (-) False XLOC_036598
TCONS_00071480 mRNA downstream 133676 36398903 ~ 36399884 (-) True XLOC_036598
TCONS_00071478 mRNA downstream 146173 36377925 ~ 36387387 (-) True XLOC_036597
TCONS_00071485 mRNA upstream 467 36541949 ~ 36554732 (-) False XLOC_036602
TCONS_00071486 mRNA upstream 1773 36543255 ~ 36554675 (-) True XLOC_036602
TCONS_00071487 mRNA upstream 50309 36591791 ~ 36618073 (-) True XLOC_036603
TCONS_00071490 mRNA upstream 489492 37030974 ~ 37043900 (-) True XLOC_036607
TCONS_00071491 mRNA upstream 504528 37046010 ~ 37056622 (-) False XLOC_036608
TCONS_00071467 other downstream 1157203 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071453 other downstream 2609049 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 2614983 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071451 other downstream 2620579 33906377 ~ 33912981 (-) False XLOC_036577
TCONS_00071450 other downstream 2623493 33906377 ~ 33910067 (-) False XLOC_036577
TCONS_00071488 other upstream 273588 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071489 other upstream 352151 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071508 other upstream 915033 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 2082673 38624155 ~ 38631651 (-) True XLOC_036624
TCONS_00071541 other upstream 3298815 39840297 ~ 39847614 (-) False XLOC_036638

Expression Profile

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