RNA id: TCONS_00072496


Basic Information

Item Value
RNA id TCONS_00072496
length 658
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_036590
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 35766632 ~ 35780687 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataaatatgattattacaactttaatattacaaattattacaaatttacaaatatcGTGAGGCACCGCATTGGGGTGGTTGCAAGAGGTTGCTATAGACACGTCCCCGCTTTCGGTTAGAGCGCGCGCGCCTGTGTTGGCATGATGGCCGAAGTCAAGGAAGACATGAGTTTATACCGACATTATTCACCCTACTCGTGTTTTTATACTGCGGTCACGCCATGTCGCCATCTGCGGTTCCGAGAAGGACGGTCACGCTGTCTGTGCAGTGAGTTTATCGGACCATGTCACCTCTCGGCCTCAAATTCAGTCAAGACAATTTTTCACTCCAAGATGTCAACAAGAATAGTTTAATAATGCGATGCACACTGTACATCGAGCttatattgcatctacatgaATTCCAGCCTTGATTTCAGCTCTAACCTAAAAACACATAGTGGTTTGGCTCTTCCACTGAACCTCCCTTTGTAGCCAAATCCAGCGAGATGTTGCTTCTTCCTCCTTAGTGACCTTTCCTGTTTCCTGGCTATTCCTTCAATTCCCAGGAGTCCAAGGGCTCTCCAGAGTGACTGCCCCGCAAACCCCCTACAACCAACCTCTACAGGTAAATTCCAGGCCCTTCATCCAACTCtgttaaacttataaaacttacGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072495 lncRNA downstream 174124 35579388 ~ 35592508 (-) True XLOC_036588
TCONS_00072494 lncRNA downstream 174787 35579388 ~ 35591845 (-) False XLOC_036588
TCONS_00071464 lncRNA downstream 1304241 34461160 ~ 34462391 (-) False XLOC_036584
TCONS_00071463 lncRNA downstream 1304241 34461160 ~ 34462391 (-) True XLOC_036584
TCONS_00072493 lncRNA downstream 1434056 34302507 ~ 34332576 (-) True XLOC_036582
TCONS_00071483 lncRNA upstream 747546 36528233 ~ 36541856 (-) False XLOC_036601
TCONS_00071484 lncRNA upstream 752873 36533560 ~ 36541482 (-) True XLOC_036601
TCONS_00072497 lncRNA upstream 952229 36732916 ~ 36968730 (-) False XLOC_036604
TCONS_00072498 lncRNA upstream 1013814 36794501 ~ 36798705 (-) True XLOC_036605
TCONS_00072499 lncRNA upstream 1034431 36815118 ~ 36959996 (-) False XLOC_036604
TCONS_00071468 mRNA downstream 30491 35735234 ~ 35736141 (-) True XLOC_036589
TCONS_00071466 mRNA downstream 999220 34766211 ~ 34767412 (-) True XLOC_036586
TCONS_00071465 mRNA downstream 1004469 34749288 ~ 34762163 (-) True XLOC_036585
TCONS_00071462 mRNA downstream 1339261 34382501 ~ 34427371 (-) True XLOC_036583
TCONS_00071460 mRNA downstream 1363793 34342536 ~ 34402839 (-) False XLOC_036583
TCONS_00071469 mRNA upstream 28394 35809081 ~ 35960987 (-) True XLOC_036591
TCONS_00071470 mRNA upstream 276631 36057318 ~ 36112278 (-) False XLOC_036592
TCONS_00071471 mRNA upstream 276631 36057318 ~ 36125849 (-) True XLOC_036592
TCONS_00071472 mRNA upstream 347790 36128477 ~ 36140405 (-) True XLOC_036593
TCONS_00071473 mRNA upstream 502861 36283548 ~ 36287046 (-) True XLOC_036594
TCONS_00071467 other downstream 390275 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071453 other downstream 1842121 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 1848055 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071451 other downstream 1853651 33906377 ~ 33912981 (-) False XLOC_036577
TCONS_00071450 other downstream 1856565 33906377 ~ 33910067 (-) False XLOC_036577
TCONS_00071488 other upstream 1034383 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071489 other upstream 1112946 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071508 other upstream 1675828 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 2843468 38624155 ~ 38631651 (-) True XLOC_036624
TCONS_00071541 other upstream 4059610 39840297 ~ 39847614 (-) False XLOC_036638

Expression Profile

//